Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_H07
(455 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21) 208 1e-54
SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_29135| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_20321| Best HMM Match : DUF1653 (HMM E-Value=1.4) 28 3.2
SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048) 28 4.2
SB_51336| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14) 27 7.4
SB_8395| Best HMM Match : Arm (HMM E-Value=2.3) 27 7.4
SB_43376| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3) 27 7.4
SB_35545| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21)
Length = 135
Score = 208 bits (509), Expect = 1e-54
Identities = 96/115 (83%), Positives = 108/115 (93%)
Frame = +1
Query: 109 WLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDL 288
W KLT+DDVKEQ++KL KKGLTPSQIGV+LRDS+GVAQVR++TG KILRI+KA GLAP L
Sbjct: 20 WQKLTSDDVKEQMYKLAKKGLTPSQIGVILRDSYGVAQVRYITGNKILRILKAKGLAPSL 79
Query: 289 PEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNW 453
PEDLY LIKKAVA+RKHLE+NRKDKDSKFRLIL+ESRIHRLARY+KTK VLPPNW
Sbjct: 80 PEDLYCLIKKAVAVRKHLEKNRKDKDSKFRLILIESRIHRLARYFKTKRVLPPNW 134
>SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1236
Score = 28.3 bits (60), Expect = 3.2
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = -3
Query: 234 NKSDLCNTMRVPEHDTDLGRSKTLFAKFEDLFLNIISG*FQPGRDTAAVRQRRLGYTLAR 55
+K ++ T + E+ D G K F F DL P D + + LGY
Sbjct: 620 DKFNVSGTQTLGENIADGGGLKLAFMAFRDLEKEKGPEEILPLLDMPSEKLFFLGYAQKE 679
Query: 54 CVHTT 40
CVHTT
Sbjct: 680 CVHTT 684
>SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 190 VMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 318
V L D HG + + + + + RI++AM PED L KK
Sbjct: 211 VTLVDDHGYSAMDVTSSQSVRRILRAMPGLFQKPEDQLQLTKK 253
>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1221
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +3
Query: 15 DIIKSRQYGSYA-RTWQGY--IPVGAAVPPQCP 104
D++ S+QYGSY ++QGY P +PP P
Sbjct: 123 DLMGSQQYGSYTDSSYQGYSTYPSQGRIPPASP 155
>SB_29135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 102 DTAAVRQRRLGYTLARCVHTTHIGGFLLY 16
DT ++ RLG L RCV T I G +++
Sbjct: 48 DTVGLKHARLGKVLWRCVRTRLIMGMIMF 76
>SB_20321| Best HMM Match : DUF1653 (HMM E-Value=1.4)
Length = 103
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 102 DTAAVRQRRLGYTLARCVHTTHIGGFLLY 16
DT ++ RLG L RCV T I G +++
Sbjct: 64 DTVGLKHARLGKVLWRCVRTRLIMGMIMF 92
>SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 28.3 bits (60), Expect = 3.2
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 67 ISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVM--LRDSHGVAQVRFVTG 240
+S LP +RS+ + +L +D ++ K + V+ + D G A + G
Sbjct: 745 LSHDDLPAQRSLGVYWELRSDSFAYRVSPPDKPFTRRGVLSVVNSVYDPLGHAAPVMLQG 804
Query: 241 KKILRIMKAMGLAPD 285
KKIL+ + AMG P+
Sbjct: 805 KKILQRLVAMGKKPE 819
>SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)
Length = 763
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 151 KLGKKGLTPSQIGVMLRD 204
KL K+GL+PSQI V+ RD
Sbjct: 465 KLNKEGLSPSQIYVLARD 482
>SB_51336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = -3
Query: 369 AVLVLPITFQMFPHGDSLLDQVVQIFR*IRSKTHSFHDTQDLFTSNKSD 223
+VL+ IT+ + S ++ I +R++ ++F+DT+D+FT +D
Sbjct: 36 SVLLREITYPSMENKSSWSQNMLNI---LRTRLNNFYDTEDVFTIVMND 81
>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
Length = 961
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 280 PDLPEDLYYL-IKKAVAMRKHLE-RNRKDKDSKFRLILVESRIHRLARYY 423
PD+P+D YYL + +++M L KD K +L++ L Y+
Sbjct: 146 PDIPDDNYYLSLSTSISMASVLSGSEEKDNFLKLCRLLIDGGTKSLLTYF 195
>SB_8395| Best HMM Match : Arm (HMM E-Value=2.3)
Length = 412
Score = 27.1 bits (57), Expect = 7.4
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 254 VS*KLWVLLLIYRKICTT*SRRLSP*GNIWNVIG--RTRTANSG*FLLNQGFTG*LVITR 427
VS +LW LL + ++CT SR L+ G W + T + ++L +G +V+TR
Sbjct: 85 VSCRLWYLLEVSCRLCTY-SRDLAGYGTYWRYLAGYGTYSRYLAGYVLTRGILQAMVLTR 143
>SB_43376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 27.1 bits (57), Expect = 7.4
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +1
Query: 61 KGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRD-SHGVAQVRFVT 237
+G S S R S+PTWL+L + + + Q V L+D +H A +++
Sbjct: 54 RGSSTSNAAPRTSLPTWLQLPGPVLLRRFVRANNNDPLVDQ--VELKDANHTYAHIQYAD 111
Query: 238 GKKILRIMKAMGLAPDLPED 297
G++ + LAP P++
Sbjct: 112 GRE--STVSLRDLAPCPPQN 129
>SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3)
Length = 284
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 262 KAMGLAPDLPEDLYYLIKKAVAMRKHL---ERNRKDKDSKFRLILVESRIHRLARYYKTK 432
+A G+APD P +L LIK+ + + + + R+ K+ + + R+ + R +TK
Sbjct: 124 RASGIAPDEPSELDQLIKQIIELEETTVPEDSQRQAKEKANKAKAEDVRLTAMERLSQTK 183
>SB_35545| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/41 (24%), Positives = 19/41 (46%)
Frame = +1
Query: 289 PEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRL 411
P D +Y ++ + R + N + D K + + R+H L
Sbjct: 77 PRDYHYGVQNEIVRRPRRDSNPQSSDPKSNALSITPRVHLL 117
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,015,828
Number of Sequences: 59808
Number of extensions: 311316
Number of successful extensions: 763
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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