Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_H07
(455 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41534-2|AAB47594.1| 151|Caenorhabditis elegans Ribosomal prote... 227 3e-60
U70858-2|AAK68881.1| 177|Caenorhabditis elegans Odorant respons... 27 6.5
AF324051-1|AAK01412.1| 177|Caenorhabditis elegans Ly-6-related ... 27 6.5
Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z48783-8|CAA88702.2| 308|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z48582-7|CAA88468.2| 308|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z46787-11|CAA86750.1| 610|Caenorhabditis elegans Hypothetical p... 27 8.6
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 27 8.6
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin ... 27 8.6
>U41534-2|AAB47594.1| 151|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 13 protein.
Length = 151
Score = 227 bits (555), Expect = 3e-60
Identities = 102/139 (73%), Positives = 124/139 (89%)
Frame = +1
Query: 37 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 216
MGRMH PGKG+++SA+PYRRSVP+W K+TA++V++QI K+ KKGL PSQIGV+LRDSHGV
Sbjct: 1 MGRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGV 60
Query: 217 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 396
QVR + G KI RI+K+ G+AP+LPEDLY+L+KKAVA+RKHLER+RKD DSK+RLILVES
Sbjct: 61 GQVRRLAGNKIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVES 120
Query: 397 RIHRLARYYKTKSVLPPNW 453
RIHRLARYYKTK LPP W
Sbjct: 121 RIHRLARYYKTKRQLPPTW 139
>U70858-2|AAK68881.1| 177|Caenorhabditis elegans Odorant response
abnormal protein2, isoform b protein.
Length = 177
Score = 27.1 bits (57), Expect = 6.5
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = -3
Query: 378 PEFAVLVLPITFQMFPHGDSLLDQVVQIFR*IRS-KTH-SFH--DTQDLFTSNKSDLCNT 211
PE A L LP M P+ + + ++R S TH H +T L++ N SD+C T
Sbjct: 22 PEDAALRLPCYSCMSPYLEDHYPYISHLYRKPLSFDTHCDKHSLETSYLYSKNCSDMCVT 81
Query: 210 MRV 202
+R+
Sbjct: 82 LRI 84
>AF324051-1|AAK01412.1| 177|Caenorhabditis elegans Ly-6-related
protein ODR-2 isoform16 protein.
Length = 177
Score = 27.1 bits (57), Expect = 6.5
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = -3
Query: 378 PEFAVLVLPITFQMFPHGDSLLDQVVQIFR*IRS-KTH-SFH--DTQDLFTSNKSDLCNT 211
PE A L LP M P+ + + ++R S TH H +T L++ N SD+C T
Sbjct: 22 PEDAALRLPCYSCMSPYLEDHYPYISHLYRKPLSFDTHCDKHSLETSYLYSKNCSDMCVT 81
Query: 210 MRV 202
+R+
Sbjct: 82 LRI 84
>Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical
protein F44A6.1b protein.
Length = 467
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 292 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 417
EDL LI+K VA ++ RKD ++ + H+LA+
Sbjct: 165 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 206
>Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical
protein F44A6.1a protein.
Length = 453
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 292 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 417
EDL LI+K VA ++ RKD ++ + H+LA+
Sbjct: 165 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 206
>Z48783-8|CAA88702.2| 308|Caenorhabditis elegans Hypothetical
protein F27E5.2 protein.
Length = 308
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 133 VKEQIFKLGKKGLTPSQIGVMLRDSHG 213
V+ I + KKG+ P I L+ SHG
Sbjct: 34 VRHAIISMAKKGIKPCHISRQLKVSHG 60
>Z48582-7|CAA88468.2| 308|Caenorhabditis elegans Hypothetical
protein F27E5.2 protein.
Length = 308
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 133 VKEQIFKLGKKGLTPSQIGVMLRDSHG 213
V+ I + KKG+ P I L+ SHG
Sbjct: 34 VRHAIISMAKKGIKPCHISRQLKVSHG 60
>Z46787-11|CAA86750.1| 610|Caenorhabditis elegans Hypothetical
protein C16C10.12 protein.
Length = 610
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = -3
Query: 282 RSKTHSFHDTQDLFTSNKSDLCNTMRVPEHDTDLGRSKTLFAKFEDLFLNIISG*FQPGR 103
R + ++ +++ D + +++ + V + ++ K LF+K + LN +SG +PG
Sbjct: 9 RKRWNAGYESIDTSSQKLTEVVTPITVTWENIEVKTRKKLFSKKQKQLLNRVSGIAKPGE 68
Query: 102 DTAAVRQRRLGYT 64
A + G T
Sbjct: 69 MVALMGASGAGKT 81
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
protein C18C4.5b protein.
Length = 1046
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 268 MGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 414
M L+ P D+ L+ + +RK L+R + +K F + + S I +LA
Sbjct: 1 MWLSKQQPHDVNALLAEKQELRKQLDREQNEKQELF--MQINSMIAKLA 47
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
protein C18C4.5a protein.
Length = 1022
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 268 MGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 414
M L+ P D+ L+ + +RK L+R + +K F + + S I +LA
Sbjct: 1 MWLSKQQPHDVNALLAEKQELRKQLDREQNEKQELF--MQINSMIAKLA 47
>AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin
protein.
Length = 456
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 292 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 417
EDL LI+K VA ++ RKD ++ + H+LA+
Sbjct: 168 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 209
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,870,918
Number of Sequences: 27780
Number of extensions: 222872
Number of successful extensions: 586
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -