Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H07
         (455 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) simi...   229   7e-61
At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A) AtRP...   228   1e-60
At1g53165.1 68414.m06023 protein kinase, putative similar to ser...    28   2.6  
At3g21960.1 68416.m02770 receptor-like protein kinase-related co...    28   3.4  
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi...    27   6.0  
At1g23010.1 68414.m02875 multi-copper oxidase type I family prot...    27   7.9  

>At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) similar
           to ribosomal protein S13;  PF00312 (View Sanger Pfam):
           ribosomal protein S15; identical to cDNA AtRPS13A mRNA
           for cytoplasmic ribosomal protein S13 GI:6521011
          Length = 151

 Score =  229 bits (560), Expect = 7e-61
 Identities = 108/139 (77%), Positives = 120/139 (86%)
 Frame = +1

Query: 37  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 216
           MGRMH+ GKGIS SALPY+RS P+WLK T+ DV E I K  KKGLTPSQIGV+LRDSHG+
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 217 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 396
            QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 397 RIHRLARYYKTKSVLPPNW 453
           RIHRLARYYK    LPP W
Sbjct: 121 RIHRLARYYKKTKKLPPVW 139


>At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A)
           AtRPS13A mRNA for cytoplasmic ribosomal protein S13,
           Arabidopsis thaliana,AB031739
          Length = 151

 Score =  228 bits (558), Expect = 1e-60
 Identities = 108/139 (77%), Positives = 119/139 (85%)
 Frame = +1

Query: 37  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 216
           MGRMH+ GKGIS SALPY+RS P+WLK T  DV E I K  KKGLTPSQIGV+LRDSHG+
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 217 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 396
            QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 397 RIHRLARYYKTKSVLPPNW 453
           RIHRLARYYK    LPP W
Sbjct: 121 RIHRLARYYKKTKKLPPVW 139


>At1g53165.1 68414.m06023 protein kinase, putative similar to
           serine/threonine protein kinase 24 [Homo sapiens]
           SWISS-PROT:Q9Y6E0
          Length = 1007

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 15  DIIKSRQYGSYARTWQGYIPV 77
           +I+ ++ YGSY+R WQ   PV
Sbjct: 196 EIVTAQLYGSYSRRWQHITPV 216


>At3g21960.1 68416.m02770 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function that is usually associated with protein kinase
           domain Pfam:PF00069; belongs to a family which includes
           receptor-like kinase family proteins
          Length = 262

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 58  GKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGV 192
           G+G  +S  PY + +   +   +  +K+  F  G  G+ P  I V
Sbjct: 47  GEGTFKSGSPYEKEIKQLIDFLSSFIKDYSFVHGVSGIGPDDINV 91


>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 551

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +1

Query: 64  GISQSALPYRRSVPTWL-KLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG 240
           GI+   + Y   +     K + DD+     +L K G  P  I           +  FV G
Sbjct: 188 GITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEG 247

Query: 241 KKILRIMKAMGLAPDL 288
            +I  +MK+  L+P++
Sbjct: 248 DRIWDLMKSKNLSPNI 263


>At1g23010.1 68414.m02875 multi-copper oxidase type I family protein
           similar to SP|P07788 Spore coat protein A {Bacillus
           subtilis}; contains Pfam profile PF00394: Multicopper
           oxidase
          Length = 581

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = +1

Query: 106 TWLKLTADDVKEQIFKLGK 162
           TWL+ T  ++++Q+F++GK
Sbjct: 21  TWLRSTCGELEDQLFEVGK 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,349,145
Number of Sequences: 28952
Number of extensions: 210581
Number of successful extensions: 617
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)