Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H06
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical pr...    36   0.018
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    33   0.096
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    33   0.096
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    31   0.39 
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81112-6|CAB03277.1|  673|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z77136-10|CAB00887.1|  673|Caenorhabditis elegans Hypothetical p...    28   4.8  

>U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical
           protein K02G10.5 protein.
          Length = 655

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 389 IEKCAENCISTPEYNPVCGSDXK-TYKNQARLFCAPNCGVK 508
           +E C+ENC     +NPVC  D K T+ +     CA   G+K
Sbjct: 442 LETCSENCHCDSFFNPVCSEDSKLTFLSPCHAGCADMPGIK 482


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 33.5 bits (73), Expect = 0.096
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 419 TPEYNPVCGSDXKTYKNQARL 481
           T E+  VCGSD KTY N+ RL
Sbjct: 469 TDEFKEVCGSDGKTYSNECRL 489



 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 395 KCAENCISTPEYNPVCGSDXKTYKNQARL 481
           KC+E C     +  VCG+D KTY N+  L
Sbjct: 318 KCSEQCTMNSAH--VCGTDGKTYLNECFL 344



 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 392 EKCAENCISTPEYNPVCGSDXKTYKNQARLFCAPNCGVKVTL 517
           + C  N +       VCGSD  TY N   L     C +K+TL
Sbjct: 865 QSCNMNHLGIVANMTVCGSDGTTYSNLCELKMFA-CNIKLTL 905


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 33.5 bits (73), Expect = 0.096
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 419 TPEYNPVCGSDXKTYKNQARL 481
           T E+  VCGSD KTY N+ RL
Sbjct: 477 TDEFKEVCGSDGKTYSNECRL 497



 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 395 KCAENCISTPEYNPVCGSDXKTYKNQARL 481
           KC+E C     +  VCG+D KTY N+  L
Sbjct: 326 KCSEQCTMNSAH--VCGTDGKTYLNECFL 352


>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 383 QTIEKCAENCISTPEYNPVCGSDXKTYKNQARLFCAPN 496
           Q ++ C    + T E NP   S+   YKN +R+ C PN
Sbjct: 284 QCVDACETETV-TDEANPCKFSNAAKYKNGSRIICGPN 320


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 380 RQTIEKCAENCISTPEYNPVCGSDXKTYKN 469
           R + + C  NC +T E++PVC ++   Y+N
Sbjct: 109 RCSSKDCNHNCTNT-EFDPVCDTNGSVYRN 137


>Z81112-6|CAB03277.1|  673|Caenorhabditis elegans Hypothetical
           protein ZC376.3 protein.
          Length = 673

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +2

Query: 404 ENCISTPEYNPVCGSDX-KTYKN 469
           +  + T EY P C SD  KTYKN
Sbjct: 73  DGILETKEYKPACMSDAKKTYKN 95


>Z77136-10|CAB00887.1|  673|Caenorhabditis elegans Hypothetical
           protein ZC376.3 protein.
          Length = 673

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +2

Query: 404 ENCISTPEYNPVCGSDX-KTYKN 469
           +  + T EY P C SD  KTYKN
Sbjct: 73  DGILETKEYKPACMSDAKKTYKN 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,033,319
Number of Sequences: 27780
Number of extensions: 283429
Number of successful extensions: 711
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)