Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H06
         (527 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con...    33   0.090
At4g22970.1 68417.m03315 peptidase C50 family protein contains P...    31   0.63 
At2g40460.1 68415.m04993 proton-dependent oligopeptide transport...    29   1.9  
At3g07050.1 68416.m00837 GTP-binding family protein contains Pfa...    29   2.6  
At3g10430.1 68416.m01251 F-box family protein contains F-box dom...    28   3.4  
At1g25540.1 68414.m03171 phytochrome and flowering time regulato...    28   3.4  
At2g27570.1 68415.m03340 sulfotransferase family protein similar...    27   5.9  
At5g60970.1 68418.m07648 TCP family transcription factor, putati...    27   7.8  
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si...    27   7.8  
At2g44460.1 68415.m05528 glycosyl hydrolase family 1 protein con...    27   7.8  

>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to Cyanogenic Beta-Glucosidase
           (GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
           beta-glucosidase GI:10834547
          Length = 577

 Score = 33.5 bits (73), Expect = 0.090
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +2

Query: 134 IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQY 259
           + Y ++  NN  ++I +NG N + DG +P    +++ +RI+Y
Sbjct: 394 LNYIKERYNNMPVYIKENGINDNDDGTKPREEIVKDTFRIEY 435


>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
            PF03568: Peptidase family C50
          Length = 1773

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 23/76 (30%), Positives = 35/76 (46%)
 Frame = +3

Query: 243  VTEFNTLWTTIIIL*PSFFLIKCSSQTKHRYQVKGKHQLLALVEHHDKQLRNARRIAFQH 422
            V++F   +   +I   +  L  CSS    +  +  K Q L L E   K+L+NA+ I   +
Sbjct: 911  VSQFGVKFAGFLIPFVNKLLDLCSSSLISQGNLYHKKQCLDLAE---KELQNAKEILIAN 967

Query: 423  QNTTPCVVAXIKLTKT 470
            Q    CV   +KL  T
Sbjct: 968  QRDFSCVKCKLKLEVT 983


>At2g40460.1 68415.m04993 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 583

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 327 HRYQVKGKHQLLALVEHHDKQLRNARRIAFQHQNTTPCVVAXIKLTK 467
           H Y+  GKHQ+     HH    R   + A +  +  PC V  +++ K
Sbjct: 277 HYYKSNGKHQV-----HHTPVFRFLDKAAIKTSSRVPCTVTKVEVAK 318


>At3g07050.1 68416.m00837 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 582

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = +3

Query: 300 LIKCSSQTKH-RYQVKGKHQLLALV-EHHDKQLRNARRIAFQHQ 425
           ++K S ++K  R  +K KH++L  V EHH K+ ++A+++    +
Sbjct: 1   MVKRSKKSKSKRVTLKQKHKVLKKVKEHHKKKAKDAKKLGLHRK 44


>At3g10430.1 68416.m01251 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 438 TGLYSGVEMQFSAHFSIVCRDVPPVLGVDVCP*PG 334
           T   S   + FS +FS+   D+P    +D+ P PG
Sbjct: 266 TNKLSDEVVSFSRYFSVTLPDIPLFRSIDILPLPG 300


>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
           protein (PFT1) PMID: 12815435
          Length = 836

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 318 QTKHRYQVKGKHQLLALVEHHDKQLRNARRIAFQHQNT 431
           Q +H+ Q + +HQL  L +HH +Q +  ++   QHQ T
Sbjct: 721 QQQHQQQQQQQHQLSQL-QHHQQQQQQQQQQQQQHQLT 757


>At2g27570.1 68415.m03340 sulfotransferase family protein similar to
           steroid sulfotransferase from [Brassica napus]
           GI:3420008, GI:3420006; contains Pfam profile PF00685:
           Sulfotransferase domain
          Length = 273

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 228 IHSGRFPS*DLFHPFLSINKFALFS 154
           +H  + PS D  HP LS N   LFS
Sbjct: 88  VHRSKHPSHDHHHPLLSNNPHVLFS 112


>At5g60970.1 68418.m07648 TCP family transcription factor, putative
           putative basic helix-loop-helix DNA binding protein
           TCP2, Arabidopsis thaliana, EMBL:AF072691
          Length = 360

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 176 IDKNGWNKSQDGNRPEWIPIQNGYRIQYPLDNNYN 280
           +DK  W K+ + +  +       ++ Q+PL N YN
Sbjct: 192 LDKGKWIKNDENSNQDHQGFNTNHQQQFPLTNPYN 226


>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein similar
            to alpha-mannosidase II SP:P27046 from [Mus musculus]
          Length = 1173

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 134  IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQYPL 265
            +RYK  ++N    + D NG+  S+     + IP+Q  Y   YP+
Sbjct: 883  VRYKTDVDNKKVFYSDLNGFQMSRRETYDK-IPLQGNY---YPM 922


>At2g44460.1 68415.m05528 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
           thaliana]
          Length = 582

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 134 IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQYPLDN 271
           + Y +   NN  ++I +NG N   DG +     + + +RI Y  D+
Sbjct: 396 LNYIKDKYNNPIVYIKENGINDYDDGTKSREEILNDTFRISYHEDH 441


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,095,691
Number of Sequences: 28952
Number of extensions: 253191
Number of successful extensions: 589
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)