Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_H05
(331 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 3.0
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 25 3.0
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 25 3.9
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 24 5.2
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 24 5.2
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 24 6.8
SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity fac... 24 6.8
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 24 6.8
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 23 9.0
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 23 9.0
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 23 9.0
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 3.0
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 33 ISDIAD-TSGLSIKARVPINLRRGACESHPVSPPSQMQRTAP 155
+S I D TS + +KA P N + + V PP+ M AP
Sbjct: 1416 VSSIEDETSTMPLKASQPTNPGAPSNHAPQVVPPAPMHAVAP 1457
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.0 bits (52), Expect = 3.0
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -1
Query: 244 IDKGA-RSDELRASV-GLTRA*SARKYPLKPPGAVRCIWDGGDTGWLSQAPRRKLIGTLA 71
I K A R + L SV ++ S RKY L+P + + G L++ K+IG A
Sbjct: 386 ISKSAERKENLMQSVFNSSKQISLRKYELEPYDPIYGLGTDGWRNVLTKFGSSKIIGREA 445
Query: 70 LML 62
LM+
Sbjct: 446 LMI 448
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 24.6 bits (51), Expect = 3.9
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 164 KTPRGRPLHLGWGRHGVAFASTASQVDRNPGLDAKT 57
+T +G L GW HG AS D+ DAKT
Sbjct: 295 RTKKGSVLIYGWNEHG-----NASNDDKRDVYDAKT 325
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 24.2 bits (50), Expect = 5.2
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 31 AYQISPTPAVLASRPGFLSTCDAVLAKATPCRPHP 135
A++ P P R FL+TC V+ + P P
Sbjct: 504 AFETIPEPLTKKEREEFLATCKDVVCASDAFFPFP 538
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 24.2 bits (50), Expect = 5.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 30 CISDIADTSGLSIKARVP 83
C D+ DTS +SIK +P
Sbjct: 87 CFEDVIDTSHVSIKLTLP 104
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 23.8 bits (49), Expect = 6.8
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 160 PPGAVRCIWDGGDTGWLSQAPRRKLIG-TLALMLRP 56
PPGAV+C++ GW+ A + +G +A+ L P
Sbjct: 240 PPGAVQCVY--AHPGWIPLA--KDFVGNNIAIDLAP 271
>SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 23.8 bits (49), Expect = 6.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 10 HSKKLRLAYQISPTPAVLASRP 75
+SK+ + YQISP P +++ P
Sbjct: 239 YSKEAKENYQISPNPLLVSPTP 260
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 23.8 bits (49), Expect = 6.8
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 128 PIPNAADGPGGF*WVFPGASRPGESHT 208
P P A GPG FPGA PG + T
Sbjct: 77 PPPGAEGGPGAGFGGFPGAG-PGGART 102
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 23.4 bits (48), Expect = 9.0
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 203 GTHPGVKRPEIPTKT-PRGRPLHLGWGRHGVAFAST 99
G H PE K+ P + +H+ W HG ++T
Sbjct: 453 GAHTFRVLPEAADKSLPADKDIHINWTGHGGNISAT 488
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 31 AYQISPTPAVLASRPGFLSTCDA 99
+YQ+S TP++ A+ P S C A
Sbjct: 242 SYQMSKTPSLEANLPQNSSNCSA 264
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 156 PGPSAAFGMGATRGGFR 106
P P A FG GA GFR
Sbjct: 129 PPPPAGFGRGAPPPGFR 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,510,662
Number of Sequences: 5004
Number of extensions: 31575
Number of successful extensions: 71
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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