Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_H05
(331 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16656| Best HMM Match : Methyltransf_3 (HMM E-Value=1.2e-19) 28 2.1
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.8
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.8
SB_29080| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_10627| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_39509| Best HMM Match : CBM_1 (HMM E-Value=5.5) 26 6.5
SB_8348| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_30010| Best HMM Match : SMC_hinge (HMM E-Value=2) 26 6.5
SB_28337| Best HMM Match : zf-CCHC (HMM E-Value=6e-06) 26 6.5
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 26 6.5
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_24979| Best HMM Match : DUF1309 (HMM E-Value=7.8) 26 8.5
SB_12855| Best HMM Match : TPR_2 (HMM E-Value=2.3e-12) 26 8.5
SB_4754| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_44182| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
>SB_16656| Best HMM Match : Methyltransf_3 (HMM E-Value=1.2e-19)
Length = 613
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -3
Query: 191 GVKRPEIPTKTPRG--RPLHLGWGRHGVA 111
G P + T T R R LH GW RHG+A
Sbjct: 72 GSYHPPVLTLTDRSFFRTLHHGWIRHGIA 100
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 46 PTPAVLASRPGFLSTC-DAVLAKATPCRPHPKCSGRPRGVLVG 171
PT VL+++P T +++ P P PK G P GV G
Sbjct: 472 PTDGVLSAKPPTKKTTPQSMIPPGKPTAPTPKPPGSPVGVTQG 514
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -3
Query: 221 RAPCQCGTHPGVKRPEIPTKTPR 153
R P TH G P IPT TPR
Sbjct: 650 RVPYSRATHHGEPSPRIPTVTPR 672
>SB_29080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 82 LSTCDAVLAKATPCRPHPKCSGRPRGVLV 168
++TCD + PC P CS + VL+
Sbjct: 1 MTTCDYTVCVGAPCGPSVDCSSNSKCVLL 29
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 228 GVTSSVPVWDSPGREA-PGNTH*NPPGPSAAFGMGATRG 115
G T + PG++ PG + PPG + AFG+ +G
Sbjct: 489 GATGPPGIPGFPGQKGEPGISRPGPPGENGAFGLPGRKG 527
>SB_10627| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -3
Query: 215 PCQCGTHPGVKRPE 174
PC+CGT+P K P+
Sbjct: 137 PCKCGTNPKFKHPD 150
>SB_39509| Best HMM Match : CBM_1 (HMM E-Value=5.5)
Length = 78
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 82 LSTCDAVLAKATPCRPHPKCSGRPRGVLV 168
++TCD + PC P CS + VL+
Sbjct: 1 MTTCDYAVCVGGPCGPSVDCSSNSKCVLL 29
>SB_8348| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 26.2 bits (55), Expect = 6.5
Identities = 6/16 (37%), Positives = 13/16 (81%)
Frame = +1
Query: 205 HWHGARHSVHPYLFYW 252
HW+ A+ ++HP++ Y+
Sbjct: 321 HWNNAKATLHPFMIYY 336
>SB_30010| Best HMM Match : SMC_hinge (HMM E-Value=2)
Length = 971
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 82 LSTCDAVLAKATPCRPHPKCSGRPRGVLV 168
++TCD + PC P CS + VL+
Sbjct: 1 MTTCDYAVCVGGPCGPSVDCSSNSKCVLL 29
>SB_28337| Best HMM Match : zf-CCHC (HMM E-Value=6e-06)
Length = 521
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 75 WP*C*DRWCRRYLICKSKFFT 13
WP C DRW R K +FT
Sbjct: 398 WPVCLDRWSLRLAAQKKPYFT 418
>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4002
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 102 ACESHPVSPPSQMQRTAPGGFSGYFRALHARVSP 203
ACE ++ P + R P G+ G +R H R P
Sbjct: 2099 ACERRCMTLPPKRWRRQPFGWLGCYRDRHVRALP 2132
>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
Frame = -1
Query: 184 SARKYPLK-PPGAVR----CIWDGGD 122
S+RKYP P G R C+W+GGD
Sbjct: 2272 SSRKYPYTLPHGGDRKFRVCVWEGGD 2297
>SB_24979| Best HMM Match : DUF1309 (HMM E-Value=7.8)
Length = 404
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 68 QGQGSYQLATRCLRKPPRVAPIPNAADGPGG 160
+GQG Q+A +R PR P D P G
Sbjct: 194 EGQGLQQMANELMRSDPRTMPRKQNNDFPIG 224
>SB_12855| Best HMM Match : TPR_2 (HMM E-Value=2.3e-12)
Length = 567
Score = 25.8 bits (54), Expect = 8.5
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -1
Query: 289 LPLSIVFEGSESPNKIDKGARSDELRASVGLTRA*SARKYPLKPPGAVRCIWDGGDTG 116
L L V E ++ K +K + RA+ G +R SAR PGA + D+G
Sbjct: 403 LGLKDVQEYAQKLKKAEKARELKQQRANSGTSRKGSARSGSASRPGAAGSRNNSADSG 460
>SB_4754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 850
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -3
Query: 170 PTKTPRGRPLHLGWGRHGVAFASTASQVDRNPGLDAK 60
P ++ RGR L + WG + ++ Q R P + A+
Sbjct: 669 PLRSNRGRALAVAWGLDKPSTSTRLRQSPRRPAITAR 705
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 146 PLHLGWGRHGVAFASTASQVDRNPGLDAKTAGVGD 42
P HLGW +H + S +Q +P +K G G+
Sbjct: 519 PTHLGWSKHPLLVESEKNQT--HPYKSSKPRGRGE 551
>SB_44182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -2
Query: 315 LTGGNAFTHYPYLLYLRDQS--PPIK*IRVHGVTSSVPVWDSPGREAPGNTH 166
LT GN H+PY LR +S P + +R + S V+ R P H
Sbjct: 441 LTAGNLERHFPYFYVLRARSRKTPGRGVRTLKIEKSHQVYGGKIRLPPIQKH 492
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,335,499
Number of Sequences: 59808
Number of extensions: 284788
Number of successful extensions: 715
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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