Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H05
         (331 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83228-2|CAB05733.1|  370|Caenorhabditis elegans Hypothetical pr...    29   0.79 
AF040660-2|AAC71147.1|  302|Caenorhabditis elegans Collagen prot...    29   1.0  
Z69794-5|CAA93682.1|  506|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z69789-6|CAA93652.1|  506|Caenorhabditis elegans Hypothetical pr...    26   7.3  
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p...    26   7.3  
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.       26   7.3  
Z81567-4|CAB04584.1|  311|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    25   9.7  
AF098985-3|AAC67421.1|  358|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z83228-2|CAB05733.1|  370|Caenorhabditis elegans Hypothetical
           protein F52F12.2 protein.
          Length = 370

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 215 PCQCGTHPGVKRPEIPTKTPRGRPLHLGW-GRHG 117
           PC C T P +  P  P   PRGRP   G  G HG
Sbjct: 78  PCDCDTGPAINCPVGP-HGPRGRPGRKGADGPHG 110


>AF040660-2|AAC71147.1|  302|Caenorhabditis elegans Collagen protein
           88 protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +2

Query: 71  GQGSYQLATRCLRKPPRVAPIPNAADGPGGF*WVFPGASRPG 196
           GQGS Q  + C+  P   AP P   DGP G       A  PG
Sbjct: 126 GQGSSQQPSECITCPAG-APGPQGPDGPAGAPGADGQAGSPG 166


>Z69794-5|CAA93682.1|  506|Caenorhabditis elegans Hypothetical
           protein F17H10.1 protein.
          Length = 506

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 282 YLLYLRDQSPPIK*IRVHGVTSSV 211
           Y +YL D+ P I  + +HG+  SV
Sbjct: 256 YEMYLPDEEPEIDIVLIHGLRGSV 279


>Z69789-6|CAA93652.1|  506|Caenorhabditis elegans Hypothetical
           protein F17H10.1 protein.
          Length = 506

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 282 YLLYLRDQSPPIK*IRVHGVTSSV 211
           Y +YL D+ P I  + +HG+  SV
Sbjct: 256 YEMYLPDEEPEIDIVLIHGLRGSV 279


>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
            protein 40 protein.
          Length = 1415

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 103  LAKATPCRPHPKCSGRPRGVLVGISGRFTP 192
            LA ATP  PH   S   R  ++   GR  P
Sbjct: 1284 LAGATPPPPHSAASSSSRPTIIAAGGRQVP 1313


>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
          Length = 1415

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 103  LAKATPCRPHPKCSGRPRGVLVGISGRFTP 192
            LA ATP  PH   S   R  ++   GR  P
Sbjct: 1284 LAGATPPPPHSAASSSSRPTIIAAGGRQVP 1313


>Z81567-4|CAB04584.1|  311|Caenorhabditis elegans Hypothetical
           protein K08C9.5 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 7   LHSKKLRLAYQISPTPAVLASRPGFLSTCDAVLAKATPCRP 129
           L  + LRL Y I P+   L   P  L     ++ K+TP  P
Sbjct: 150 LKVENLRLGYLIPPSHVNLLLEPQNLKISKKLVLKSTPSTP 190


>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +1

Query: 40  ISPTPAVLASRPGFLSTCDAVLAKATPCRPHPKCS 144
           ++P P  L       ST D     +  C PHP C+
Sbjct: 86  VAPKPLFLNGLLPSSSTSDVSSQNSPKCDPHPSCT 120


>AF098985-3|AAC67421.1|  358|Caenorhabditis elegans Hypothetical
           protein C08G5.3 protein.
          Length = 358

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 95  TRCLRKPPRVAPIPNAADGPGGF*WV 172
           +R L K PR    P+  DGPG   WV
Sbjct: 333 SRHLPKYPRGPATPSFGDGPGATTWV 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,829,801
Number of Sequences: 27780
Number of extensions: 204938
Number of successful extensions: 468
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)