Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H05
         (331 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14200.1 68417.m02191 expressed protein                             27   2.3  
At5g32405.1 68418.m03813 hypothetical protein                          26   5.3  
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    26   5.3  
At3g42100.1 68416.m04322 AT hook motif-containing protein-relate...    26   5.3  
At4g35985.1 68417.m05121 senescence/dehydration-associated prote...    26   7.0  
At5g56380.1 68418.m07038 F-box family protein similar to unknown...    25   9.3  
At3g51250.1 68416.m05610 senescence/dehydration-associated prote...    25   9.3  
At2g41820.1 68415.m05168 leucine-rich repeat transmembrane prote...    25   9.3  

>At4g14200.1 68417.m02191 expressed protein
          Length = 784

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 295 YALPLSIVFEGSESPNKIDKGARSDE 218
           YA P+S+VFEGS++ ++I     + +
Sbjct: 493 YASPVSVVFEGSDASDQIKSSTETSK 518


>At5g32405.1 68418.m03813 hypothetical protein
          Length = 256

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 267 RDQSPPIK*IRVHGVTSSVPVWDSPGREAPGNTH*NP 157
           RDQS P   I  H  TS + ++  PG     NT  +P
Sbjct: 49  RDQSTPRSSIGHHHFTSPLDLFTPPGSRVSSNTTRSP 85


>At4g02660.1 68417.m00361 WD-40 repeat family protein /
           beige-related contains Pfam PF00400: WD domain, G-beta
           repeat; similar to BEIGE (GI:3928547) [Rattus
           norvegicus]; lysosomal trafficking regulator - Bos
           taurus, EMBL: AF114785
          Length = 3471

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +3

Query: 27  TCISDIADTSGLSIKARVPINLRRGACESHPVSPPSQMQRTAPGGFSGYFRALHARVSPT 206
           T + D+ D  G+   A    +L  G   S P +PPS  Q +    F+   +     +SPT
Sbjct: 5   TLLKDLKDKVGV---AETTADLIAGEAISDPTTPPSSSQASPSSSFAALAQHDFNLLSPT 61


>At3g42100.1 68416.m04322 AT hook motif-containing protein-related
           very low similarity to SP|Q9UUA2 DNA repair and
           recombination protein pif1, mitochondrial precursor
           {Schizosaccharomyces pombe}; weak hit to Pfam profile
           PF02178: AT hook motif
          Length = 1752

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +1

Query: 43  SPTPAVLASRPGFLSTCDAVLAKAT--PCRPHPKCSGRPR 156
           +P  A  A    F++T     AKA   P  P PK  GRPR
Sbjct: 259 TPHIAKCAEHEKFIATLKKTAAKAAANPNLPQPKKRGRPR 298


>At4g35985.1 68417.m05121 senescence/dehydration-associated
           protein-related similar to senescence-associated protein
           12 [Hemerocallis hybrid cultivar]
           gi|3551958|gb|AAC34857; similar to early-responsive to
           dehydration stress ERD7 protein [Arabidopsis thaliana]
           gi|15320412|dbj|BAB63916
          Length = 448

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 4   ILHSKKLRLAYQISPTPAVLASRPGFLSTCDAV 102
           +++SK  +  + + P   VLA+  GF   CDAV
Sbjct: 330 VINSKAGQKLFGLLPGEMVLATLDGFNKVCDAV 362


>At5g56380.1 68418.m07038 F-box family protein similar to unknown
           protein (emb|CAB62440.1); contains Pfam profile PF00646:
           F-box domain
          Length = 439

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -2

Query: 276 LYLRDQSPPIK*IRV---HGVTSSVPVWDSPG 190
           ++L + SP ++ I++   H VT+  P W+ PG
Sbjct: 331 IHLLEDSPSLQDIKINQCHPVTNPRPQWNQPG 362


>At3g51250.1 68416.m05610 senescence/dehydration-associated
           protein-related similar to senescence-associated protein
           12 [Hemerocallis hybrid cultivar]
           gi|3551958|gb|AAC34857; similar to early-responsive to
           dehydration stress ERD7 protein [Arabidopsis thaliana]
           gi|15320412|dbj|BAB63916
          Length = 463

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 10  HSKKLRLAYQISPTPAVLASRPGFLSTCDAV 102
           +SK  +  + + P   VLAS  GF   CDAV
Sbjct: 353 NSKAGKKLFGLLPGEIVLASLDGFSKICDAV 383


>At2g41820.1 68415.m05168 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 890

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 172 ISGRFTPG*VPHWHGARHSVHPYLFYWGTLIPQI 273
           +SG    G +PHW G   S+  +  Y   L+ +I
Sbjct: 165 VSGNGLNGSIPHWVGNLSSLRVFTAYENDLVGEI 198


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,415,407
Number of Sequences: 28952
Number of extensions: 189759
Number of successful extensions: 521
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)