Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H04
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       29   0.28 
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar...    27   1.1  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   1.5  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   2.6  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    25   3.5  
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    24   6.1  
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    24   6.1  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   6.1  
SPCC757.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    24   6.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   8.0  

>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 158

 Score = 28.7 bits (61), Expect = 0.28
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 144 YKQQVLRLLHMLWYFPSENGMLDHR 218
           Y  +VLR  H  WY P ++ M+D R
Sbjct: 42  YTSKVLRCSHCGWYEPVDSAMIDQR 66


>SPAC23G3.07c |snf30||SWI/SNF complex subunit
           Snf30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 7   YIKMEGSHKLNSRNDHIHNGEGTATENRRAPPPPYVS 117
           YI M+G++ L ++ D +++  G  + N    P P +S
Sbjct: 170 YITMQGANSLKAQQDLLNSFTGAPSNNSHNIPDPNLS 206


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 34   LNSRNDHIHNGEGTATENRRAPPPPYVSVEAQP 132
            + S+N H  NG   A  N      P+V+V A P
Sbjct: 1084 VTSKNGHSRNGSHAAHSNNVIGTQPHVNVSAVP 1116


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 4   VYIKMEG--SHKLNSRNDHIHNGEGTATENRRAPPPP 108
           V +K EG  +++ +  N +++NG   +  +  APPPP
Sbjct: 91  VAVKHEGISNNESSDENMNVNNGNLDSFSSSSAPPPP 127


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 223 NNR*SSIPFSEGKYHSMCRSRNTCCL 146
           +NR S IPFS+ ++H      +  CL
Sbjct: 119 DNRESEIPFSDTRFHDEFDRESRACL 144


>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 82  ENRRAPPPPYVSVEAQPVNVVTSSKYYD 165
           E + APPP Y+SV+ Q ++ VT     D
Sbjct: 175 ERKLAPPPNYMSVQ-QEIDWVTRHMLVD 201


>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 213 DQASRFQRENTTACVGVVI 157
           D+A +F  ++ T CVG+ I
Sbjct: 199 DEAVKFSEQSETKCVGITI 217


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 79  WRFLLHCVYGRSLNSIYVSLPS*CTP 2
           W   L  + G SLNS++  + S  TP
Sbjct: 118 WAVFLGIIVGFSLNSVFTFIDSFATP 143


>SPCC757.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 116

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 133 VNVVTSSKYYDSYTCCG 183
           VN   +S+ Y  YTCCG
Sbjct: 2   VNPDKTSRVYCKYTCCG 18


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 85  NRRAPPPPYVSVEAQPVNVVTSSKYYDS 168
           N   PPPP  +VE Q  +      YY S
Sbjct: 188 NPPPPPPPPPAVEDQAADANEPDDYYSS 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,554,860
Number of Sequences: 5004
Number of extensions: 28833
Number of successful extensions: 72
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)