Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_H04
(357 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0399 - 20955319-20955838,20955939-20956201 29 0.81
04_04_1385 - 33157557-33157655,33157752-33158201,33158864-331590... 27 3.3
12_02_0532 + 20093147-20093794 27 4.3
12_01_0753 + 6810239-6810661,6812495-6812584,6812724-6812894,681... 27 4.3
09_01_0025 - 441528-444284 27 5.7
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 27 5.7
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 27 5.7
12_01_0627 + 5171131-5171516,5171869-5172074,5172533-5172597,517... 26 7.6
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 26 7.6
01_06_1022 + 33887089-33888411 26 7.6
>05_04_0399 - 20955319-20955838,20955939-20956201
Length = 260
Score = 29.5 bits (63), Expect = 0.81
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 55 IHNGEGTATENRRAPPPPY-VSVEAQ 129
+ G+G A N+ APPPP+ +SV A+
Sbjct: 130 LSGGDGIAASNKAAPPPPHPISVPAK 155
>04_04_1385 -
33157557-33157655,33157752-33158201,33158864-33159004,
33159058-33159329,33160371-33160821
Length = 470
Score = 27.5 bits (58), Expect = 3.3
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Frame = +1
Query: 7 YIKMEGSHKLNSRNDHIHNGEGTATENRRAPPPPYVSVEAQPVNVVTSSKYY---DSYTC 177
Y++ME + K +S I + PP P + + YY DS TC
Sbjct: 332 YVRMERNIKASSGKCGIAVEPSYPLKKGENPPNPGPTPPSPTPPPTVCDNYYTCPDSTTC 391
Query: 178 CGIFPLKTGCLIIGYYNLVSAVC 246
C I+ C G L A C
Sbjct: 392 CCIYEYGKYCYAWGCCPLEGATC 414
>12_02_0532 + 20093147-20093794
Length = 215
Score = 27.1 bits (57), Expect = 4.3
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -1
Query: 174 CVGVVILAACNHVDXXXXXXXXXXXRC 94
C G VI AAC HVD C
Sbjct: 87 CTGEVIFAACGHVDRCSSALETELLAC 113
>12_01_0753 +
6810239-6810661,6812495-6812584,6812724-6812894,
6813015-6813109,6813538-6813658,6813884-6814015
Length = 343
Score = 27.1 bits (57), Expect = 4.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 16 MEGSHKLNSRNDHIHNGEGTATENRRAPPPPYVSVEAQPVNVVTSS 153
M+G KL R +H+G G A PPPP V++ A+ +V +
Sbjct: 73 MDGLAKLRVR---VHHGVGGAGAAAVEPPPPEVALLARNFSVAVDT 115
>09_01_0025 - 441528-444284
Length = 918
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 234 HQVIITDDQASRFQRENTTACVGVVILAACN 142
HQ++I++D S F +EN+ C V CN
Sbjct: 622 HQIVISED-VSAFAKENSPPCYRSVSDLLCN 651
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 88 RRAPPPPYVSVEAQPVNVVTSSKYYDSYTCCGIFP 192
R PPPP V V AQ V T YY S+ +P
Sbjct: 155 RSRPPPPSVGV-AQRAPVSTERVYYGSFDPTSGYP 188
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 76 ATENRRAPPPPYVSVEAQPVNVVTSSKY 159
AT N PPPP S+E P ++Y
Sbjct: 611 ATHNAPPPPPPPSSIEQPPATYGADAEY 638
>12_01_0627 +
5171131-5171516,5171869-5172074,5172533-5172597,
5173115-5173355,5173635-5174095
Length = 452
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 122 STDT*GGGGARLFSVAVPSPLCIW 51
ST+T GGA L P+P+C W
Sbjct: 80 STETSPDGGAALIRRYTPAPVCRW 103
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 26.2 bits (55), Expect = 7.6
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Frame = +2
Query: 2 WCTSRWKAHIN*IQGTTIYTMEKEPP-------PRIGVHRHRLMYLLRRSLSTWL 145
WC W IN GTT + K P P I HR +L + + L WL
Sbjct: 610 WCAKMWHMLINFFTGTTCRCVNKLLPARTFSFLPPIDAHRQKLYAICKDIL--WL 662
>01_06_1022 + 33887089-33888411
Length = 440
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -2
Query: 158 YLLLVTTLTGCAS 120
Y++LVT LTGCAS
Sbjct: 180 YVMLVTVLTGCAS 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,491,373
Number of Sequences: 37544
Number of extensions: 200908
Number of successful extensions: 759
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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