Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_H04
(357 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10) 33 0.090
SB_55406| Best HMM Match : DUF1534 (HMM E-Value=0.45) 30 0.64
SB_45142| Best HMM Match : Herpes_IE68 (HMM E-Value=3.8) 29 1.5
SB_35595| Best HMM Match : AT_hook (HMM E-Value=3.7) 29 1.5
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15) 29 1.5
SB_34667| Best HMM Match : AT_hook (HMM E-Value=3.7) 29 1.5
SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_23956| Best HMM Match : AT_hook (HMM E-Value=3.7) 29 1.5
SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11) 29 1.5
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11) 29 1.5
SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_42307| Best HMM Match : AT_hook (HMM E-Value=3.7) 29 1.5
SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05) 29 1.5
SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07) 28 1.9
SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6) 28 1.9
SB_40649| Best HMM Match : AT_hook (HMM E-Value=3.7) 28 1.9
SB_40783| Best HMM Match : MH2 (HMM E-Value=0) 28 1.9
SB_15995| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12) 27 3.4
SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19) 27 5.9
SB_10886| Best HMM Match : SH3_1 (HMM E-Value=2.8e-19) 27 5.9
SB_3748| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
>SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)
Length = 1272
Score = 32.7 bits (71), Expect = 0.090
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +1
Query: 10 IKMEGSHKLNSRNDHIHNGEGTATENR----RAPPPPYVSVEAQP-VNVVTSSKYY 162
IK++GS +L RN + AT + R PPPP S E QP +N S + Y
Sbjct: 1118 IKVDGSGRLTKRNSRVLRAYAPATPSPDHQYRTPPPPPRSPECQPTLNSSPSPRTY 1173
>SB_55406| Best HMM Match : DUF1534 (HMM E-Value=0.45)
Length = 248
Score = 29.9 bits (64), Expect = 0.64
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +1
Query: 25 SHKLNSRNDHIHNGEGTAT--ENRRAPPPPYVSVEAQPVNV 141
+H ND G+ T E PPPPY ++E PV +
Sbjct: 176 THDPRHSNDRPPRGDSIVTQLEGPNEPPPPYSTLERSPVTI 216
>SB_45142| Best HMM Match : Herpes_IE68 (HMM E-Value=3.8)
Length = 292
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 10 IKMEGSHKLNSRNDHIHNGEGTAT----ENRRAPPPPYVSVEAQP 132
IK++GS +L RN AT R PPPP S E QP
Sbjct: 184 IKVDGSGRLTLRNRRFLRAYTPATPTPDHQYRTPPPPPRSPECQP 228
>SB_35595| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 214
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 10 IKMEGSHKLNSRNDHIHNGEGTAT----ENRRAPPPPYVSVEAQP 132
IK++GS +L RN AT R PPPP S E QP
Sbjct: 60 IKVDGSGRLTLRNRRFLRAYTPATPTPDHQYRTPPPPPRSPECQP 104
>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
Length = 1600
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 10 IKMEGSHKLNSRNDHIHNGEGTAT----ENRRAPPPPYVSVEAQP 132
IK++GS +L RN AT R PPPP S E QP
Sbjct: 817 IKVDGSGRLTLRNRRFLRAYTPATPTPDHQYRTPPPPPRSPECQP 861
>SB_34667| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 10 IKMEGSHKLNSRNDHIHNGEGTAT----ENRRAPPPPYVSVEAQP 132
IK++GS +L RN AT R PPPP S E QP
Sbjct: 86 IKVDGSGRLTLRNRRFLRAYTPATPTPDHQYRTPPPPPRSPECQP 130
>SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 10 IKMEGSHKLNSRNDHIHNGEGTAT----ENRRAPPPPYVSVEAQP 132
IK++GS +L RN AT R PPPP S E QP
Sbjct: 513 IKVDGSGRLTLRNRRFLRAYTPATPTPDHQYRTPPPPPRSPECQP 557
>SB_23956| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 10 IKMEGSHKLNSRNDHIHNGEGTAT----ENRRAPPPPYVSVEAQP 132
IK++GS +L RN AT R PPPP S E QP
Sbjct: 86 IKVDGSGRLTLRNRRFLRAYTPATPTPDHQYRTPPPPPRSPECQP 130
>SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)
Length = 1213
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 10 IKMEGSHKLNSRNDHIHNGEGTAT----ENRRAPPPPYVSVEAQP 132
IK++GS +L RN AT R PPPP S E QP
Sbjct: 1059 IKVDGSGRLTLRNRRFLRAYTPATPTPDHQYRTPPPPPRSPECQP 1103
>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
Length = 1771
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 55 IHNGEGTATENRRAPPPPYVSVE 123
+H+ G++ E+ + PPP YVS E
Sbjct: 897 MHHENGSSMESEQKPPPSYVSTE 919
>SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1269
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 10 IKMEGSHKLNSRNDHIHNGEGTAT----ENRRAPPPPYVSVEAQP 132
IK++GS +L RN AT R PPPP S E QP
Sbjct: 1115 IKVDGSGRLTLRNRRFLRAYTPATPTPDHQYRTPPPPPRSPECQP 1159
>SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 10 IKMEGSHKLNSRNDHIHNGEGTAT----ENRRAPPPPYVSVEAQP 132
IK++GS +L RN AT R PPPP S E QP
Sbjct: 523 IKVDGSGRLTLRNRRFLRAYTPATPTPDHQYRTPPPPPRSPECQP 567
>SB_42307| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 269
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 10 IKMEGSHKLNSRNDHIHNGEGTAT----ENRRAPPPPYVSVEAQP 132
IK++GS +L RN AT R PPPP S E QP
Sbjct: 115 IKVDGSGRLTLRNRRFLRAYTPATPTPDHQYRTPPPPPRSPECQP 159
>SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05)
Length = 848
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 10 IKMEGSHKLNSRNDHIHNGEGTAT----ENRRAPPPPYVSVEAQP 132
IK++GS +L RN AT R PPPP S E QP
Sbjct: 694 IKVDGSGRLTLRNRRFLRAYTPATPTPDHQYRTPPPPPRSPECQP 738
>SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
Length = 942
Score = 28.3 bits (60), Expect = 1.9
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 10 IKMEGSHKLNSRNDHIHNGEGTATENR----RAPPPPYVSVEAQP 132
IK++GS +L RN AT R PPPP S E QP
Sbjct: 798 IKVDGSGRLTLRNRRFLRAYTPATPTPDHQFRTPPPPPRSPECQP 842
>SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
Length = 287
Score = 28.3 bits (60), Expect = 1.9
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 10 IKMEGSHKLNSRNDHIHNGEGTAT----ENRRAPPPPYVSVEAQP 132
IK++GS +L RN AT R PPPP S E QP
Sbjct: 133 IKVDGSGRLTLRNRRFLRAYTPATPTPDHQYRTPPPPPRSPERQP 177
>SB_40649| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 28.3 bits (60), Expect = 1.9
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 10 IKMEGSHKLNSRNDHIHNGEGTATENR----RAPPPPYVSVEAQP 132
IK++GS +L RN AT R PPPP S E QP
Sbjct: 86 IKVDGSGRLTLRNRRFLRAYTPATPTPDHQFRTPPPPPRSPECQP 130
>SB_40783| Best HMM Match : MH2 (HMM E-Value=0)
Length = 494
Score = 28.3 bits (60), Expect = 1.9
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
Frame = +1
Query: 49 DHIHNGEGTATENRRAPPPPYVSVEAQPVN---VVTSSKYYDSYTCCGIFPLKTGCLIIG 219
D +G G +E+ +P P +++ PVN ++ S S+ + I
Sbjct: 182 DMADSGAGYMSEDGGSPRPEPNAMDVDPVNSPPSISQSAEAMSHVTAVNYQEPLSWCSIA 241
Query: 220 YYNLVSAVCXXXXXXXXXXXXNNYMDPN-NNTEKRNLGL 333
YY L + V + + DPN N+E+ LGL
Sbjct: 242 YYELNNRVGELFHAKSTSLIVDGFTDPNTTNSERFCLGL 280
>SB_15995| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)
Length = 1108
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 16 MEGSHKLNSRNDHIHNGEGTATENRRAPPP 105
M+G S D I N GT +EN PPP
Sbjct: 803 MQGESNFQSAIDDIDNILGTTSENVENPPP 832
>SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)
Length = 413
Score = 26.6 bits (56), Expect = 5.9
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Frame = +1
Query: 94 APPPPYVSVEAQPV-NVVTSS------KYYDSYTCCGIFPLKTGC 207
APPP Y +P +VV S +Y +SYT C + +KT C
Sbjct: 193 APPPSYSECAQEPAKSVVLPSANGALAEYCNSYTPCQGYGIKTCC 237
>SB_10886| Best HMM Match : SH3_1 (HMM E-Value=2.8e-19)
Length = 152
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 56 YTMEKEPPPRIGVHRHRLMYLLRRSLSTWLQAA 154
YT + E P + V + ++ LLRR + W +A+
Sbjct: 68 YTFKAESPRELSVAKGEIVCLLRRVDANWYEAS 100
>SB_3748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 144 YKQQVLRLLHMLWYFPSENGMLDHRL 221
YKQ +R LH W + G+ D+RL
Sbjct: 392 YKQTYIRDLHNFWSIGKQCGLSDNRL 417
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,878,588
Number of Sequences: 59808
Number of extensions: 227456
Number of successful extensions: 568
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -