Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H04
         (357 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical pr...    28   1.7  
Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical pr...    28   1.7  
AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical ...    27   2.9  
Z93782-3|CAB07855.1| 1294|Caenorhabditis elegans Hypothetical pr...    26   8.9  
Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical pr...    26   8.9  
Z81484-12|CAB03973.1| 1294|Caenorhabditis elegans Hypothetical p...    26   8.9  
Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical pr...    26   8.9  
U40945-6|AAS80346.1|  437|Caenorhabditis elegans Hypothetical pr...    26   8.9  
U40945-5|AAS80344.1|  617|Caenorhabditis elegans Hypothetical pr...    26   8.9  

>Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical protein
            F43D9.1 protein.
          Length = 1226

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 94   APPPPYVSVEAQPVNVVTSSKYYDS 168
            APPP Y+++ A PVN +     Y S
Sbjct: 1078 APPPHYLAIAAPPVNSIYGQTEYTS 1102


>Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical protein
            F43D9.1 protein.
          Length = 1226

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 94   APPPPYVSVEAQPVNVVTSSKYYDS 168
            APPP Y+++ A PVN +     Y S
Sbjct: 1078 APPPHYLAIAAPPVNSIYGQTEYTS 1102


>AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical
           protein K10B4.1 protein.
          Length = 1210

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/61 (22%), Positives = 26/61 (42%)
 Frame = +1

Query: 61  NGEGTATENRRAPPPPYVSVEAQPVNVVTSSKYYDSYTCCGIFPLKTGCLIIGYYNLVSA 240
           N +GTA    R     +VS    P+ V  +  +++ ++C            +GY N ++ 
Sbjct: 753 NSDGTALNCSRCDSGRFVSPSCFPIPVPVNDVHFEPFSCLSFVRSLPAQKTLGYRNQMNQ 812

Query: 241 V 243
           V
Sbjct: 813 V 813


>Z93782-3|CAB07855.1| 1294|Caenorhabditis elegans Hypothetical
           protein C47A10.1 protein.
          Length = 1294

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 61  NGEGTATENRRAPPPPYVSV 120
           + EG++ +   APPPP +S+
Sbjct: 12  SSEGSSEKKEEAPPPPKISI 31


>Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +1

Query: 58  HNGEGTATENR--RAPPPPYVSVEAQPVNVV 144
           HN      + R  + PPPP V+V   P NVV
Sbjct: 487 HNNHHNHQQKRFVQGPPPPMVAVGVVPGNVV 517


>Z81484-12|CAB03973.1| 1294|Caenorhabditis elegans Hypothetical
           protein C47A10.1 protein.
          Length = 1294

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 61  NGEGTATENRRAPPPPYVSV 120
           + EG++ +   APPPP +S+
Sbjct: 12  SSEGSSEKKEEAPPPPKISI 31


>Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +1

Query: 58  HNGEGTATENR--RAPPPPYVSVEAQPVNVV 144
           HN      + R  + PPPP V+V   P NVV
Sbjct: 487 HNNHHNHQQKRFVQGPPPPMVAVGVVPGNVV 517


>U40945-6|AAS80346.1|  437|Caenorhabditis elegans Hypothetical
           protein F10D7.5c protein.
          Length = 437

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 88  RRAPPPPYVSVEAQPVNVVTS 150
           R APPPP ++V  +P    TS
Sbjct: 20  RNAPPPPIIAVPPRPAPARTS 40


>U40945-5|AAS80344.1|  617|Caenorhabditis elegans Hypothetical
           protein F10D7.5a protein.
          Length = 617

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 88  RRAPPPPYVSVEAQPVNVVTS 150
           R APPPP ++V  +P    TS
Sbjct: 200 RNAPPPPIIAVPPRPAPARTS 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,734,081
Number of Sequences: 27780
Number of extensions: 166708
Number of successful extensions: 550
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)