Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_H04
         (357 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.47 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   1.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   2.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   3.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   3.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   5.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   5.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.47
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +1

Query: 25   SHKLNSRNDHIHNGEGTATENRRAPPPP 108
            SH       H++        NRR PPPP
Sbjct: 1678 SHSTWDPRRHMYEELNHCAPNRRCPPPP 1705


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 77  PPRIGVHRHRLMYLLRRSLSTWLQAASITTPTHAVVFSL*KRDA*SSVII-TWCQLFVYS 253
           P  +G+HR     +L  S       A   TPT+AVV S         V++  +C+L+ Y+
Sbjct: 160 PISLGLHRANEPVVLDDSKEEHPTCALDLTPTYAVVSSSISFYVPCIVMLGIYCRLYCYA 219


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 44  GTTIYTMEKEPPPRIGVHRHRLMYLLRRSLSTWLQAASIT 163
           GTT  T E++P P   V  H +  L +    + +Q  S T
Sbjct: 110 GTTNLTFEEDPEPFGRVRDHNISALCKELGISVVQKVSHT 149



 Score = 21.4 bits (43), Expect = 3.3
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 85 SRWRFLLHCV 56
          ++WRFLL C+
Sbjct: 68 NKWRFLLQCL 77


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 96  CTPILGGGSFSIVY 55
           C   LG G F IVY
Sbjct: 69  CGTFLGSGGFGIVY 82


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 73  TATENRRAPPPPYVSVEAQPVNVVTSSKYYDSYTCC 180
           +A + +   P P  SV + P  V  + KY     CC
Sbjct: 571 SAIQFKLGHPEPPESVCSLPCEVGQAKKYVAGEQCC 606


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 100 PPPYVSVEAQPVNVVTSSKYYDSYT 174
           P     + A+P N+  S+   DS+T
Sbjct: 554 PETSKGINAEPSNIEESNNMTDSFT 578


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +1

Query: 109 YVSVEAQPVNVVTSSKYYDSYTCCGIF 189
           ++  E QP+    S  +  + T C +F
Sbjct: 696 FIEAEPQPIGKALSKCHNRNVTTCNMF 722


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,695
Number of Sequences: 438
Number of extensions: 2242
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)