Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_H01
(495 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 160 9e-41
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 156 1e-39
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 28 0.89
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 27 2.1
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 26 3.6
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch... 25 4.7
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 25 6.3
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 25 8.3
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 25 8.3
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 25 8.3
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 160 bits (389), Expect = 9e-41
Identities = 84/166 (50%), Positives = 111/166 (66%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPISLS 181
I H RK +R++ S++V T+++FN+ IL+RLF S+ NRPPIS+S
Sbjct: 5 IERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISIS 64
Query: 182 RLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILT 355
++A K + EG V+VGTV++D RL TVPK++VAAL T+ ARARIL AGGE+LT
Sbjct: 65 KIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLT 124
Query: 356 FDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVR 493
DQLALRAPTG TVL++G+++AREA RHFG P H PYVR
Sbjct: 125 LDQLALRAPTGSNTVLLRGKKHAREAYRHFG---FGPHKHKAPYVR 167
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 156 bits (379), Expect = 1e-39
Identities = 81/166 (48%), Positives = 110/166 (66%), Gaps = 2/166 (1%)
Frame = +2
Query: 2 INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPISLS 181
I H +K +R++ S++V T+++FN+ IL+RLF S+ NRPPIS+S
Sbjct: 5 IERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISIS 64
Query: 182 RLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILT 355
++A K + + VVVGTV++D R+ TVPK+++AAL T+ ARARIL AGGE+LT
Sbjct: 65 KIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLT 124
Query: 356 FDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVR 493
DQLALRAPTG TVLV+G+++AREA RHFG P H PYVR
Sbjct: 125 LDQLALRAPTGSNTVLVRGKKHAREAYRHFG---FGPHKHKAPYVR 167
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.9 bits (59), Expect = 0.89
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 160 PTSDFFVPFGTPHEEAYTRGFDRCSR 237
P +D F+PF TP +AY + R R
Sbjct: 209 PQTDNFIPFLTPKRQAYGQSSSRADR 234
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 26.6 bits (56), Expect = 2.1
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +2
Query: 221 LIAVVVGTVSNDVRLY-TVPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGRKT 397
L+ +VV ++NDVRL+ V + + H E A L A +++ + T KT
Sbjct: 694 LLKMVVPLITNDVRLWRIVARYYLWRRHFAESLNA-TLKAYRILISSPNVTSDEATWNKT 752
Query: 398 VLVQGRRNAREAVRHFGPAPG 460
V+G EA + G PG
Sbjct: 753 --VEGALELVEAYANLGEMPG 771
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +2
Query: 386 GRKTVLVQGRRNAREAVRHFGPAPGA-PR 469
G L Q RR V HFG APG+ PR
Sbjct: 844 GESFDLSQKRRRGEPVVHHFGFAPGSTPR 872
>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 4.7
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +2
Query: 164 PPISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGG 343
PP+ S L + T + L ++ + + R+ T+PK+ + L + +R +L +GG
Sbjct: 206 PPVDESFLMGSISSDTVDTLHTYLIKALQD--RVLTIPKLCSSNLDCSHYSRVCVLYSGG 263
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 359 DQLALRAPTGRKTVLVQGRRNAREAVRHFGPA 454
D++ + P G K + Q ++ R A++H+ A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 8.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 95 PSICTVLPIVSSTHPET*LRCAELSCRVYD 6
P +CTVLPI+ + + + C++YD
Sbjct: 150 PHLCTVLPIMIPVYKWWQVPYFFVGCKIYD 179
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 24.6 bits (51), Expect = 8.3
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1
Query: 108 FVRLAKYLYSFTN 70
F LAKYLYSFT+
Sbjct: 114 FPELAKYLYSFTD 126
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 24.6 bits (51), Expect = 8.3
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +2
Query: 254 DVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGRKTVLVQGRRNARE 430
D L VP + VT R + GG + R+ T R+T+L G RN+R+
Sbjct: 61 DANLSNVPTINSIPSPVT---RPPVAVGGGIFYGARRTRNRSQTQRRTLLENGFRNSRK 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,506
Number of Sequences: 5004
Number of extensions: 37264
Number of successful extensions: 92
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -