Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G24
         (582 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g29624.1 68418.m03640 DC1 domain-containing protein contains ...    29   1.7  
At5g54020.1 68418.m06719 expressed protein                             29   2.3  
At5g43400.1 68418.m05305 expressed protein strong similarity to ...    29   2.3  
At1g71810.1 68414.m08299 ABC1 family protein contains Pfam domai...    29   2.3  
At5g54050.1 68418.m06722 DC1 domain-containing protein                 28   5.2  
At3g07390.1 68416.m00881 auxin-responsive protein / auxin-induce...    27   6.9  
At4g14980.1 68417.m02302 DC1 domain-containing protein contains ...    27   9.1  

>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
           Pfam PF03107: DC1 domain
          Length = 488

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 249 QFSRQKQNCGGMFRDATLDDTLCDDHLAFI-CEKDPKKLQ 133
           Q SR+ Q C     D  L+ T+CDD+  F+ C   P+K++
Sbjct: 418 QSSRRCQACDREIHDDPLNCTVCDDYSLFMRCATLPRKVK 457


>At5g54020.1 68418.m06719 expressed protein 
          Length = 556

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 249 QFSRQKQNCGGMFRDATLDDTLCDDH-LAFICEKDPKKLQ 133
           Q SRQ Q CG       L  T+CDD+ L   C   P+K++
Sbjct: 406 QSSRQCQACGTKIDHDPLSCTVCDDYSLCMRCTTLPRKVK 445


>At5g43400.1 68418.m05305 expressed protein strong similarity to
           unknown protein (emb|CAB86628.1)
          Length = 655

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = -1

Query: 411 LFAQHPAQTLTVSFDVIIRLGFYNWDEGNYFRTLDGQTLEAAGYAKWAKG-QPDNQFSRQ 235
           L+  HP +TL ++   ++  G++       FR L+GQ +E      W K  Q   +  R+
Sbjct: 128 LYKNHP-KTLALNVPALVDFGYFKDLPEILFRILEGQNMERGKNRVWRKRVQRKFKGKRE 186

Query: 234 KQN-CGGMFRDATLDD 190
           K++   G   D  L++
Sbjct: 187 KKSEISGEMEDRILEN 202


>At1g71810.1 68414.m08299 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 692

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -1

Query: 375 SFDVIIRLGFYNWDE--GNYFRTLDGQ 301
           SF+ ++  GFY+ D   GN+ RT DGQ
Sbjct: 330 SFNQLLEYGFYHADPHPGNFLRTYDGQ 356


>At5g54050.1 68418.m06722 DC1 domain-containing protein 
          Length = 580

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 249 QFSRQKQNCGGMFRDATLDDTLCDDH-LAFICEKDPKKLQ 133
           Q SR+ Q C    +D  L+ T+CD++ L   C   P+K++
Sbjct: 429 QSSRRCQACNKEIKDDPLNCTVCDEYSLCMRCATLPRKVK 468


>At3g07390.1 68416.m00881 auxin-responsive protein / auxin-induced
           protein (AIR12) identical (with 7 residue gap) to
           auxin-induced protein AIR12 GI:11357190 [Arabidopsis
           thaliana]
          Length = 273

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = -3

Query: 475 NGGRPTWPINQ**NRSRGLEELVRTASRSDPHRLV*CYN*TGFLQLGRGQL---FQNVRR 305
           NGG   W IN    +  G +  +   S      +V  YN + +  L  G+L   F N+R 
Sbjct: 97  NGGWVAWAINPTGTKMAGSQAFLAYRSGGGAAPVVKTYNISSYSSLVEGKLAFDFWNLRA 156

Query: 304 TNVRGSRL 281
            ++ G R+
Sbjct: 157 ESLSGGRI 164


>At4g14980.1 68417.m02302 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 470

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 243 SRQKQNCGGMFRDATLDDTLCDDH-LAFICEKDPKKLQ 133
           S++ Q CG    D  L+ T+CDD+ L   C   P+K++
Sbjct: 319 SKRCQACGTETDDNLLNCTVCDDYALCMKCATLPRKVK 356


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,050,300
Number of Sequences: 28952
Number of extensions: 209261
Number of successful extensions: 452
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)