Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G23
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1240 - 28612250-28613704                                         29   2.6  
08_02_1345 - 26286448-26286679,26287483-26288038,26288068-262883...    28   4.5  
08_02_0444 - 17209447-17209491,17210559-17210849,17211655-172116...    27   7.9  

>06_03_1240 - 28612250-28613704
          Length = 484

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 328 LVLVTPPD*TRPRLAPNV*QLATALAAVSKKKP 426
           L+L  PP   RP LAP V  LA  L A + + P
Sbjct: 3   LLLAPPPSAARPLLAPTVPHLARTLLAGAPETP 35


>08_02_1345 -
           26286448-26286679,26287483-26288038,26288068-26288358,
           26288953-26290516
          Length = 880

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 114 HHYGLLHQDPYFHCCFIFIMVYIIL 40
           H  GL++ +PY  CCF+    ++++
Sbjct: 245 HLVGLVYHNPYVACCFLCSETFVLI 269


>08_02_0444 -
           17209447-17209491,17210559-17210849,17211655-17211672,
           17211798-17211969,17212523-17212630,17212940-17213382
          Length = 358

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 382 IHLGRGGAAFSPGASRALTHHCDIVHNEVYEA 287
           + L R  AAF P    +  H+C+ VH +  +A
Sbjct: 219 VALERNPAAFMPKVLNSTAHNCEFVHEQKSKA 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,712,145
Number of Sequences: 37544
Number of extensions: 165701
Number of successful extensions: 497
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)