Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G23
         (483 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro...    27   5.0  
At3g11570.1 68416.m01413 expressed protein similar to At5g06230        27   6.6  
At4g25190.1 68417.m03626 hypothetical protein  contains Pfam pro...    27   8.8  
At2g26120.1 68415.m03134 glycine-rich protein                          27   8.8  

>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
           P450 76A2, eggplant, PIR:S38534
          Length = 516

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 10  SITISASWSIENNINHYKNETAVKIWILMKKAIVMK 117
           S+  S  W++EN +N  + +   +I I +KKA+ ++
Sbjct: 472 SMVRSFDWALENGLNAEEMDMGERIGITLKKAVPLE 507


>At3g11570.1 68416.m01413 expressed protein similar to At5g06230
          Length = 427

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 119 FFITMAFFIKIHIFTAVSFL*WFILFSIL 33
           FF T+   IK HIF  +S L  F++FS++
Sbjct: 21  FFSTLK--IKKHIFVGISLLITFLIFSVI 47


>At4g25190.1 68417.m03626 hypothetical protein  contains Pfam
           profile: PF04484 family of unknown function (DUF566)
          Length = 443

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 288 ASYTSLWTMSQ*CVSARDAPGLNAAPPRPKCITVSDSPGS 407
           AS  S W +S   +S    P  ++AP    C+T  +SP S
Sbjct: 127 ASSPSAWALSPGRLSTMKTPLSSSAPTTSMCMTPPESPVS 166


>At2g26120.1 68415.m03134 glycine-rich protein 
          Length = 104

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 464 FRWELGRXRVFPTGFF 417
           FRW +   RVFP GFF
Sbjct: 28  FRWWVSGDRVFPRGFF 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,477,595
Number of Sequences: 28952
Number of extensions: 117409
Number of successful extensions: 289
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)