Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G22
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    25   7.0  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   7.0  

>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 411 KFYETATRSYTIAPIFLSFNSYFMINHQINNGIDAAPNVF 292
           K+ +   R      + LSF  +  IN   NNG D +  VF
Sbjct: 394 KYTDRLGRPLIAMIVVLSFGFFAYINEANNNGNDISDTVF 433


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 444 KNFSSHNQXRMKFYETATRSYTIAPIFLSFNS 349
           K+F+S    R+ F  T T++ T++  +LS+N+
Sbjct: 430 KSFTSALPRRLTFNRTHTKASTMSLPYLSYNA 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,276,330
Number of Sequences: 5004
Number of extensions: 19518
Number of successful extensions: 33
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)