Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G22
         (448 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60240.1 68414.m06784 apical meristem formation protein-relat...    28   3.3  
At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ...    27   5.8  
At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2 tr...    27   7.6  
At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2 tr...    27   7.6  
At1g72300.1 68414.m08358 leucine-rich repeat transmembrane prote...    27   7.6  
At1g17250.1 68414.m02101 leucine-rich repeat family protein cont...    27   7.6  

>At1g60240.1 68414.m06784 apical meristem formation protein-related
           contains similarity to CUC1 [Arabidopsis thaliana]
           gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
           gi|1279640|emb|CAA63101
          Length = 175

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 372 PIFLSFNSYFMINHQINNGI 313
           PI L F  YF +N  +N+G+
Sbjct: 53  PIILHFGRYFFVNRSVNSGL 72


>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 455

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 357 FNSYFMINHQINNGIDAAPNVFLPRE 280
           F  Y+M+NHQ + G +A    F+P E
Sbjct: 375 FQDYYMMNHQHHGGGEAFNGGFVPGE 400


>At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2
          transmembrane domains; similar to DNA double-strand
          break repair rad50 ATPase. (Swiss-Prot:O33600)
          [Sulfolobus acidocaldarius]
          Length = 440

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 28 ACTGTSGGDQPTFQEEGGDDDL 93
          A  G  GGD+P  + +GGD +L
Sbjct: 25 ADAGIDGGDEPKLRSDGGDIEL 46


>At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2
          transmembrane domains; similar to DNA double-strand
          break repair rad50 ATPase. (Swiss-Prot:O33600)
          [Sulfolobus acidocaldarius]
          Length = 440

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 28 ACTGTSGGDQPTFQEEGGDDDL 93
          A  G  GGD+P  + +GGD +L
Sbjct: 25 ADAGIDGGDEPKLRSDGGDIEL 46


>At1g72300.1 68414.m08358 leucine-rich repeat transmembrane protein
           kinase, putative similar to GI:3641252 from [Malus x
           domestica] (Plant Mol. Biol. 40 (6), 945-957 (1999))
          Length = 1095

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -2

Query: 447 KKNFSSHNQXRMKFYETATRSYTIAPIFLSFNSYFMINHQINNGIDAAPNVFLPREAL 274
           K+ F        K Y+   R+Y   P+F++ N+    N Q N      P +++ R  L
Sbjct: 537 KELFQLRALMSQKAYDATERNYLELPVFVNPNN-VTTNQQYNQLSSLPPTIYIKRNNL 593


>At1g17250.1 68414.m02101 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 756

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 411 KFYETATRSYTIAPIFLSFNSYFMINHQINNGIDAAPNVFLPREALLSS 265
           K Y+   R+Y   P+F+S N+    + Q N      P +++ R  L  S
Sbjct: 553 KAYDATERNYLKLPVFVSPNN-VTTHQQYNQLFSLPPGIYIRRNNLKGS 600


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,950,364
Number of Sequences: 28952
Number of extensions: 110835
Number of successful extensions: 241
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)