Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G21
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    27   2.1  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    26   3.6  
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    26   3.6  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    25   4.8  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   6.3  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   6.3  
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    25   8.4  
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    25   8.4  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.4  

>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 44  DLYGAAIVQVGVLDMLRFQKFTIGYAWVSD-YGSSDNKTQFEYLLKYSPLHNIV 202
           D+    + Q+G+++M      T GY  +SD + +S  K  F+ +     L+N++
Sbjct: 342 DILAGCLDQIGIMEMKSLASSTGGYLVLSDSFTTSIFKQSFQRIFGRDSLNNML 395


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 325 VSQHVLQRRDVLERVQRHDTVVVVCGQH 242
           VS+  L++RD ++ +QRH  V  +  Q+
Sbjct: 103 VSERELRKRDAMQFIQRHQKVRNILAQY 130


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 29  INQRPDLYGAAIVQVGVLDMLRFQKFTIGYA-WVSDYGSS 145
           ++ RPDLYG   +   V+  L F      YA + + +G+S
Sbjct: 81  VDDRPDLYGPFWITTTVIQALFFSNSITEYARYATGHGTS 120


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 224 ALLGHQDSQCCATANTSTSTRIVSCYRNCRSPKPKRNR 111
           ALLG   S C    +   S RI SC++   + KP   R
Sbjct: 215 ALLGSGASCCGIGTDIGGSIRIPSCFQGLYALKPSTGR 252


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 306 SVAMYLSECSGTTRSSWSADSTSVAG-YCTPRTSGL 202
           SV +Y ++ + T  S WS  STSV G    P TS +
Sbjct: 87  SVVLYSAKETVTVSSYWSLVSTSVTGTVYVPYTSSV 122


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 29  INQRPDLYGAAIVQVGVLDMLRFQKFTIGYAWVSDYGSS 145
           +N   D + +AI +   L   R +K     AW++DY S+
Sbjct: 794 LNTYNDYFNSAISENPTLKSDRSEKVAFYSAWITDYKST 832


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 114 PIVNFWNRSMSNTP 73
           P+V +WNR  +N P
Sbjct: 46  PLVRYWNRKQNNLP 59


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
 Frame = +2

Query: 119 AWVSDYGSSDNKTQFEYLLKYSPLHNIVSPDV-RGVQYPATLVLSADHDDRVVPLHSLKY 295
           A+ +  G   N    E LLK   ++N  +P   + V++ AT     DH    V     +Y
Sbjct: 95  AFANASGEQYNNPVAEKLLK-DAIYNCNTPLFEKNVKWLATF----DHSSPSVQQSCFQY 149

Query: 296 IATLQHVLRHSTVQRHPVLARIDTKAGHGGGKP 394
           + +L   L         +LA+ +    HG GKP
Sbjct: 150 LDSLSSSLNAIYEAELSLLAQEENVIMHGNGKP 182


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -2

Query: 358 TREYWVSLYCRVSQHVLQRRDVLERV--QRHDTVVVVCGQH 242
           T E   +LY R S H L    VL+ V  + + T  V C +H
Sbjct: 63  TAEPVFNLYSRFSVHTLSHNLVLDNVSSESNKTSAVFCKRH 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,861,386
Number of Sequences: 5004
Number of extensions: 34695
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)