Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G19
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.0  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   6.2  

>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = -3

Query: 469 TPSLPQTCLISRVQIHGCISATLTSWHSPRCFISRDGANGREHSSEHLLG*VFPSVPQTG 290
           T S P T +    ++H    AT  + +S     S    N    +  ++L    PS+ Q  
Sbjct: 121 TYSTPYTTMNPSNEMHPYPPATFENNYSVLPDHSSQ-PNAYSFTGSNILPTQSPSLNQMQ 179

Query: 289 AYMKVQTQGSASSHVPSFT 233
            Y  +Q  GS+++ +PSF+
Sbjct: 180 DYQNLQQNGSSNTTIPSFS 198


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 218 QRFENRERGYV*GSRSLRLY 277
           Q  +  +RGYV G R+LRLY
Sbjct: 901 QHKDTYDRGYVRGLRTLRLY 920


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,608
Number of Sequences: 5004
Number of extensions: 39185
Number of successful extensions: 92
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)