Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G19
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0727 - 35766252-35766481,35766592-35766721,35767049-357671...    30   1.2  
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299...    29   2.0  
01_01_0363 + 2850954-2853675,2853819-2854225                           29   2.0  
03_06_0047 + 31266940-31268394                                         29   2.7  
03_02_0495 - 8879612-8880283,8880369-8880608,8880713-8880775,888...    28   4.7  
08_02_0384 + 16552194-16552621,16552909-16553173,16553239-16553337     27   8.2  
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452...    27   8.2  
06_01_0838 - 6360232-6360460,6360571-6360719,6360825-6360933,636...    27   8.2  
05_01_0329 - 2580083-2580115,2580787-2580864,2580986-2581078,258...    27   8.2  
02_05_0722 + 31220798-31220887,31220992-31221036,31221524-312215...    27   8.2  
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993...    27   8.2  

>03_06_0727 -
           35766252-35766481,35766592-35766721,35767049-35767116,
           35767179-35767217,35767677-35767761,35768097-35768197,
           35768292-35768511
          Length = 290

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
 Frame = +3

Query: 255 EADPCVCTFIYAPVCGTDGNTYPNKCSLECS-RPLAPSL-------EMKHRGECQEVKVA 410
           + D  V   +Y P  GT     P K S+E   +P+   +       EM  +   Q + + 
Sbjct: 35  QGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLL 94

Query: 411 DIQPCICTREIKQVCGSDG 467
            + P   T  I QV G+DG
Sbjct: 95  TVHPNTTTSVILQVVGNDG 113


>05_01_0383 +
           2990812-2990855,2991364-2991463,2991554-2991622,
           2991724-2991960,2992045-2992228,2992307-2992442,
           2992529-2992691,2992958-2993108,2993154-2993278,
           2993349-2993504,2993792-2993860,2993951-2994019,
           2994127-2994264,2994626-2994773,2994856-2994866,
           2995212-2995352,2995441-2995569,2995860-2995899,
           2996020-2996348,2996902-2996919
          Length = 818

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 59  YTRYISDRRCAN--IRRNSAAVVMRVRKKLKTGLRIRRQDLPQPVPLVLREGQDAQRF 226
           Y  ++S R  AN   ++N  A+  RV+      +R  + DLP    L++REG +  RF
Sbjct: 508 YKNFVSQRSDANGWYQKNGVAL-FRVQGLKHDCIRAIQVDLPLKQSLLVREGSEPDRF 564


>01_01_0363 + 2850954-2853675,2853819-2854225
          Length = 1042

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 421 GCISATLTSWHSPRCFISRDGANGREHSSEHLLG*VFPS 305
           G  S TLTSW+S   F + +G     H    ++G   PS
Sbjct: 31  GLSSRTLTSWNSSTSFCNWEGVKCSRHRPTRVVGLSLPS 69


>03_06_0047 + 31266940-31268394
          Length = 484

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 135 RNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCEEADPCVCTF 281
           R +   C  D  TY     ++CE DK    LK+ K    ++  P + TF
Sbjct: 368 RRMIKCCQPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTF 416


>03_02_0495 -
           8879612-8880283,8880369-8880608,8880713-8880775,
           8881510-8881620
          Length = 361

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 439 SRVQIHGCISATLTSWHS 386
           +RV+ H CIS+++  WHS
Sbjct: 296 ARVKKHACISSSIIGWHS 313


>08_02_0384 + 16552194-16552621,16552909-16553173,16553239-16553337
          Length = 263

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -3

Query: 163 SDPQTGLKFLAHAHDDGSXXXXXXXXXAIRNIPSIFILCYCLWAQNP 23
           S PQT  ++ A  HDD           A +  PS+  L YC  A+NP
Sbjct: 189 SSPQTATRYAATGHDDLVIIIISTAAAAAK--PSLLPL-YCSLAKNP 232


>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
            4521632-4521723,4522226-4522342,4522641-4522704,
            4523175-4523228,4523579-4523666,4523788-4524023,
            4525258-4525478,4525634-4525827,4525938-4525995,
            4526771-4526824,4526851-4527473,4527580-4527640,
            4528417-4528590,4528803-4529063,4529201-4529320,
            4529388-4530022,4530062-4530828,4530915-4531012,
            4531101-4531155,4531230-4531318
          Length = 2010

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 307  SVPQTGAYMKVQTQGSASSHVPS 239
            S  Q G+ M+ Q+QG ASS +PS
Sbjct: 1668 STVQNGSQMQQQSQGPASSAIPS 1690


>06_01_0838 -
           6360232-6360460,6360571-6360719,6360825-6360933,
           6361446-6362276,6362865-6362969,6363084-6363180,
           6363303-6363341,6363435-6363477
          Length = 533

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 421 GCISATLTSWHSPRCFISRDGANGREHSSE 332
           GCI+ ++T  H+  CF+    A+G +   E
Sbjct: 305 GCIAISMTLHHTSLCFVCSHLASGEKEGDE 334


>05_01_0329 -
           2580083-2580115,2580787-2580864,2580986-2581078,
           2581209-2581326,2583350-2583440,2585167-2585207,
           2585854-2585981,2586078-2586353,2587318-2587472,
           2587557-2587700,2587991-2588567
          Length = 577

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 481 LP*VTPSLPQTCLISRVQIHGCISATLTSWHSPR 380
           LP + P +P TCL  R  +H   S+T T  H+ +
Sbjct: 198 LPTLLPCVPDTCLTDRNLLHIRESSTKTVLHAAK 231


>02_05_0722 +
           31220798-31220887,31220992-31221036,31221524-31221595,
           31221743-31221871
          Length = 111

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 439 SRVQIHGCISATLTSWHSPRCFISR 365
           +R Q+HG   ATL  +H PR   SR
Sbjct: 19  NRAQLHGRCRATLGGFHDPRSNSSR 43


>01_07_0122 -
           41196081-41196205,41197561-41198245,41198961-41199329,
           41199405-41199514,41200539-41200833
          Length = 527

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 310 PSVPQTGAYMKVQTQGSASSHVPSFTIFKSLCVLSLSQYKRHWL 179
           PSVP+     +  T  S+ +   + T+F  +  +SLS Y RH L
Sbjct: 291 PSVPRMKQLAQTITNSSSGNLGLNHTVFGRVKQISLSSYLRHSL 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,454,768
Number of Sequences: 37544
Number of extensions: 283379
Number of successful extensions: 894
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)