Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G18
         (161 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   1.3  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   1.8  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    24   2.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   3.1  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    24   3.1  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    23   5.4  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    23   5.4  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    23   7.2  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    23   7.2  
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p...    22   9.5  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    22   9.5  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    22   9.5  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    22   9.5  

>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 18  NFYQQLTTRYYFERLTNGLGSIPEF 92
           NFY  +    YF   T G+ S+P F
Sbjct: 126 NFYPPIQNSTYFINATGGIDSMPYF 150


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 75  GSIPEFSWYSPIKTGYYPLMTSYYFP-FAQ 161
           G  P+  +Y P +  YYP   +Y  P +AQ
Sbjct: 107 GGYPQQPYYYPNQPNYYPAQPAYAQPVYAQ 136


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
 Frame = -1

Query: 149 EIV*SHQGIVTSLNR-----RVPREFRYGTQAVCKTLEVITC 39
           E V SH+ I+++L +     RVP    YG     KT  ++ C
Sbjct: 35  EDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILAC 76


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 52   SSVLQTAWVPYLNSLG 99
            +S L T+W+ +LNS+G
Sbjct: 3566 NSALLTSWICFLNSIG 3581


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 48  YFERLTNGLGSIPEFSWYSP 107
           YF+     LG+   F WY P
Sbjct: 349 YFDNSLENLGNYNSFIWYGP 368


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 70  AWVPYLNSLGTRLLRLVTI 126
           +W+   N+ G  LLRL++I
Sbjct: 117 SWISVANAFGLLLLRLISI 135


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
            family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 54   RSNNVLLIVGRNCNIFR 4
            R+N+ L+I G  C +FR
Sbjct: 963  RNNDFLIIYGIGCEVFR 979


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 51  FERLTNGLGSIPEFSWYSPIKTGYYPLMTSYY 146
           +E L   +  + +F+W S    G  PL  SY+
Sbjct: 784 WEHLYMKVQDVRKFNWLSMCTPGALPLTFSYF 815


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 87   EFSWYSPIKTGYYPLMTSYYFPF 155
            +F  YS +K  YY L+  YYF +
Sbjct: 1066 DFGVYS-LKDEYYDLVDPYYFHY 1087


>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 128 GIVTSLNRRVPREFRYGTQAVCKTLEVITC 39
           G+ T     +  EFR G   +C TL  +TC
Sbjct: 138 GVETGSITELFGEFRTGKSQICHTL-AVTC 166


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 102 SPIKTGYYPLMTSYYFP 152
           +PIK+  +PL++SY  P
Sbjct: 393 TPIKSATHPLLSSYSEP 409


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 15  YNFYQQLTTRYYFERLTNGLGSIPEFSWY 101
           Y F +QLTT+Y  E  T     I ++  Y
Sbjct: 185 YEFNEQLTTKYGLEFRTIFFSYIRKYDAY 213


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 66  NGLGSIPEFSWYSP 107
           +G GS+  +SW++P
Sbjct: 487 DGHGSVERYSWFAP 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 689,421
Number of Sequences: 5004
Number of extensions: 10448
Number of successful extensions: 37
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)