Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_G18
(161 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g24180.1 68417.m03470 pathogenesis-related thaumatin family p... 31 0.14
At3g62160.1 68416.m06984 transferase family protein low similari... 29 0.42
At2g20000.1 68415.m02338 cell division cycle family protein / CD... 26 3.9
At5g49850.1 68418.m06173 jacalin lectin family protein similar t... 25 5.1
At5g41040.2 68418.m04989 transferase family protein similar to h... 25 5.1
At5g41040.1 68418.m04988 transferase family protein similar to h... 25 5.1
At4g38660.1 68417.m05473 thaumatin, putative similar to thaumati... 25 6.8
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 25 9.0
At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -relat... 25 9.0
>At4g24180.1 68417.m03470 pathogenesis-related thaumatin family
protein similar to SP|P28493 Pathogenesis-related
protein 5 precursor (PR-5) {Arabidopsis thaliana};
contains Pfam profile PF00314: Thaumatin family
Length = 255
Score = 30.7 bits (66), Expect = 0.14
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 128 GIVTSLNRRVPREFRYGTQAVCKT 57
G VT LN++ P E R+G+ + CK+
Sbjct: 165 GCVTDLNQKCPTELRFGSGSACKS 188
>At3g62160.1 68416.m06984 transferase family protein low similarity
to Taxus cuspidata transferases: 10-deacetylbaccatin
III-10-O-acetyl transferase GI:6746554, taxadienol
acetyl transferase GI:6978038,
2-debenzoyl-7,13-diacetylbaccatin III-2-O-benzoyl
transferase GI:11559716; contains Pfam profile PF02458
transferase family
Length = 428
Score = 29.1 bits (62), Expect = 0.42
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 125 IVTSLNRRVPREFRYGTQAVCKTLEVITCC 36
I + L R REFR T +C EVI C
Sbjct: 224 IPSDLIERFKREFRASTGEICSAFEVIAAC 253
>At2g20000.1 68415.m02338 cell division cycle family protein / CDC
family protein low similarity to SP|P30260|CC27_HUMAN
Protein CDC27Hs (Cell division cycle protein 27 homolog)
Homo sapiens; contains Pfam profile PF00515: TPR Domain
Length = 744
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 24 YQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYY 146
YQ+ ERL L + E Y+P ++ Y LM Y
Sbjct: 658 YQKANILVCLERLDEALEVLEELKEYAPSESSVYALMGRIY 698
>At5g49850.1 68418.m06173 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767; contains Pfam profile PF01419
jacalin-like lectin domain
Length = 596
Score = 25.4 bits (53), Expect = 5.1
Identities = 7/30 (23%), Positives = 16/30 (53%)
Frame = +3
Query: 63 TNGLGSIPEFSWYSPIKTGYYPLMTSYYFP 152
+ G + WY+P+ GY + ++++P
Sbjct: 410 SKGCAVVGFHGWYAPLGAGYITALGAHFYP 439
>At5g41040.2 68418.m04989 transferase family protein similar to
hypersensitivity-related gene product HSR201 - Nicotiana
tabacum, EMBL:X95343; contains Pfam transferase family
domain PF00248
Length = 441
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +2
Query: 26 PTINNTLLLRASYKRLGFHT 85
P++++TLL+ ++ RLGFHT
Sbjct: 368 PSLSSTLLI-TTWSRLGFHT 386
>At5g41040.1 68418.m04988 transferase family protein similar to
hypersensitivity-related gene product HSR201 - Nicotiana
tabacum, EMBL:X95343; contains Pfam transferase family
domain PF00248
Length = 457
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +2
Query: 26 PTINNTLLLRASYKRLGFHT 85
P++++TLL+ ++ RLGFHT
Sbjct: 384 PSLSSTLLI-TTWSRLGFHT 402
>At4g38660.1 68417.m05473 thaumatin, putative similar to
thaumatin-like protein [Arabidopsis thaliana]
GI:2435406, thaumatin-like protein precursor [Pyrus
pyrifolia] GI:3241854; contains Pfam profile PF00314:
Thaumatin family
Length = 345
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 128 GIVTSLNRRVPREFRYGTQAVCKT 57
G T LN + P E R+G CK+
Sbjct: 159 GCTTDLNIQCPAELRFGDGDACKS 182
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 49 TSSVLQTAWVPYLNSL 96
TSSV+Q AW P LN +
Sbjct: 468 TSSVVQCAWHPRLNQI 483
>At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -related
similar to CLIP-associating protein CLASP2 (GI:13508651)
[Rattus norvegicus]
Length = 1439
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 58 VLQTAWVPYLNSLGTRLLRLVTI 126
+L A++PYL L + +RLVTI
Sbjct: 1399 MLGKAFLPYLEGLNSTQVRLVTI 1421
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,430,518
Number of Sequences: 28952
Number of extensions: 48599
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 12,070,560
effective HSP length: 34
effective length of database: 11,086,192
effective search space used: 210637648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -