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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G17
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514          171   3e-43
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294          170   4e-43
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923          169   8e-43
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504...    54   8e-08
06_01_0379 - 2723365-2723490,2724558-2724647,2724813-2725046,272...    30   1.1  
01_05_0790 + 25253363-25254136,25259037-25259897                       28   3.4  
07_01_0344 - 2490700-2493249                                           27   6.0  
01_06_1839 - 40245862-40246022,40246872-40246977,40247868-402479...    27   6.0  

>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
          Length = 130

 Score =  171 bits (416), Expect = 3e-43
 Identities = 80/121 (66%), Positives = 99/121 (81%)
 Frame = +3

Query: 81  AAAVVSGKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMP 260
           A   + G  +   +A    ++RIRITL+S+NV++LEKVC+DL+ GAK ++LRVKGPVR+P
Sbjct: 9   AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIP 68

Query: 261 TKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIA 440
           TKVL ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S  ++VKQITSI IEPGVEVEVTIA
Sbjct: 69  TKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIA 128

Query: 441 D 443
           D
Sbjct: 129 D 129


>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
          Length = 127

 Score =  170 bits (414), Expect = 4e-43
 Identities = 84/126 (66%), Positives = 102/126 (80%), Gaps = 4/126 (3%)
 Frame = +3

Query: 78  MAAAVV----SGKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKG 245
           MAAA V     G  +   +A    ++RIRITL+S+NV++LEKVC+DL+ GAK ++LRVKG
Sbjct: 1   MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKG 60

Query: 246 PVRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEV 425
           PVR+PTKVL ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S  ++VKQITSI IEPGVEV
Sbjct: 61  PVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEV 120

Query: 426 EVTIAD 443
           EVTIAD
Sbjct: 121 EVTIAD 126


>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
          Length = 128

 Score =  169 bits (412), Expect = 8e-43
 Identities = 76/101 (75%), Positives = 92/101 (91%)
 Frame = +3

Query: 141 HRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEGSKTW 320
           HRIRITL+S++V++LEKVC DL+ GAK + L+VKGPVRMPTKVL ITTRK+PCGEG+ TW
Sbjct: 27  HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTW 86

Query: 321 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 443
           DRF+MR+HKRVIDL S +++VKQITSI IEPGVEVEVTI+D
Sbjct: 87  DRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 127


>03_02_0020 -
           5045900-5046211,5046233-5046290,5046604-5047242,
           5048475-5048515,5048672-5048728,5048952-5049140
          Length = 431

 Score = 53.6 bits (123), Expect = 8e-08
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
 Frame = +3

Query: 129 ISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTKVLRITTRKTPCGEG 308
           ++P  +IRI L S  V  +E  C  +I  AK    +  GPV +PTK        +P    
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHK 388

Query: 309 SKTWDRFQMRIHKRVIDLHSP-SEIVKQITSINIEPGVEVEVTI 437
              +  F++R H+R+ID+  P ++ +  +  + +  GV+VEV +
Sbjct: 389 DSRF-HFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 431


>06_01_0379 -
           2723365-2723490,2724558-2724647,2724813-2725046,
           2725174-2725470
          Length = 248

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 327 ICPKSWNPHRKVFYV-L*CGEPWSAFGLDPLHG 232
           +CP  W+ HR+ F++ + C  P++  G   L+G
Sbjct: 183 VCPAYWSAHRRWFFMSMICLNPFTCIGRSKLNG 215


>01_05_0790 + 25253363-25254136,25259037-25259897
          Length = 544

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 256 CRPRFSASQHVKHLAVRVPRLGTDSRCASTSV 351
           C P  SA+  +KH A++   LGTD+  A  +V
Sbjct: 211 CGPGGSAAPALKHKALQAEALGTDNAMADVAV 242


>07_01_0344 - 2490700-2493249
          Length = 849

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 145 RWIGEISAWGFSISFPDTTAAA 80
           RWIG+ S   F++S P T A A
Sbjct: 46  RWIGDSSPKNFTLSLPGTVATA 67


>01_06_1839 -
           40245862-40246022,40246872-40246977,40247868-40247949,
           40248337-40248437,40248531-40248568,40248624-40248675
          Length = 179

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -1

Query: 214 PLMRSEQTFSSERTLRDVSVILIRWIGEISAWGFSISFPDTTAAAMLLRYSGRD 53
           P++ SE  +S E+  R V        G++ AWG  + FP T A A   R S R+
Sbjct: 25  PMLNSELHYSQEKNKRKV--------GDVPAWGKPLKFP-TGAEAETDRVSTRE 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,392,441
Number of Sequences: 37544
Number of extensions: 310882
Number of successful extensions: 847
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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