Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G16
         (252 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   1.2  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    24   2.7  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    23   6.2  
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    23   6.2  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    23   8.2  

>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 143  GEHLKPEFLKLNPQHTVPTPSR 208
            GE  +P  LK +P H VP PSR
Sbjct: 1155 GEDQRPMVLK-DPDHLVPEPSR 1175


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 214 PSSTRRRDRVLRIQLQKFRFQVLPVVEIDQL 122
           PSS++ RDR+L  +  +    +L V    Q+
Sbjct: 267 PSSSKHRDRILYAKFLELNESLLKVASFQQM 297


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 220 ERPSSTRRRDRVLRIQLQKFRFQV 149
           ++PSST R     +++ +KF F V
Sbjct: 11  QQPSSTNRVQAYAKLEFEKFSFFV 34


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 146 EHLKPEFLKLNPQHTVPT 199
           E   PE L LNP   VPT
Sbjct: 40  EQKSPEHLALNPNGRVPT 57


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 220 ERPSSTRRRDRVLRIQLQKFRFQVLPVVEID 128
           E PS  +R   VL  QLQ  R  +  V+E +
Sbjct: 203 ESPSKIQRLQDVLLKQLQDTRLLISQVIEAE 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 929,991
Number of Sequences: 5004
Number of extensions: 13770
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)