Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_G16
(252 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0267 - 21430370-21430474,21430559-21430618,21430937-214310... 29 0.39
11_06_0225 + 21451966-21452036,21452127-21452200,21452342-21452436 29 0.69
12_01_0421 - 3321590-3323692 28 1.2
03_01_0249 - 1935355-1935827,1936129-1936330 26 3.7
04_04_0368 + 24741755-24741970,24742415-24742811,24742892-247431... 26 4.8
03_05_0272 + 22604458-22604877 26 4.8
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494... 26 4.8
04_04_0558 - 26231752-26231837,26231929-26231974,26232059-262321... 25 6.4
01_01_0874 - 6840708-6840947,6841063-6841149,6841217-6841281,684... 25 6.4
09_03_0044 - 11855569-11855664,11855775-11855891,11856572-118566... 25 8.4
>02_04_0267 -
21430370-21430474,21430559-21430618,21430937-21431046,
21431220-21431295,21431541-21431594,21431935-21432006,
21432088-21432173,21432694-21432750,21432886-21432991
Length = 241
Score = 29.5 bits (63), Expect = 0.39
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 143 GEHLKPEFLKLNPQHTVP 196
GEH PEF+K+NP VP
Sbjct: 49 GEHSDPEFMKVNPMKFVP 66
>11_06_0225 + 21451966-21452036,21452127-21452200,21452342-21452436
Length = 79
Score = 28.7 bits (61), Expect = 0.69
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 146 EHLKPEFLKLNPQHTVP 196
EHL PEF K+NP VP
Sbjct: 41 EHLSPEFKKINPMGQVP 57
>12_01_0421 - 3321590-3323692
Length = 700
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 137 HHGEHLKPEFLKLNPQHTVPTPSR*RPLDLGVARHHH 247
HH H F + + + P + R L LG A HHH
Sbjct: 14 HHAPHKSSSFSQPSARDDKPRDAIDRNLSLGSAGHHH 50
>03_01_0249 - 1935355-1935827,1936129-1936330
Length = 224
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 143 GEHLKPEFLKLNPQHTVP 196
GEH P FLKL P VP
Sbjct: 40 GEHKSPSFLKLQPFGQVP 57
>04_04_0368 +
24741755-24741970,24742415-24742811,24742892-24743187,
24743860-24744096
Length = 381
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -1
Query: 171 FRNSGFRCSPWWRSTNFKLRLRFSALAVSRTALQGADPGT 52
F +S FRC W+ +F LR + + + L D G+
Sbjct: 53 FNSSAFRCLTVWKQEDFVLRYKNTGESQWSFILSAPDKGS 92
>03_05_0272 + 22604458-22604877
Length = 139
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 121 KVGRSPPRGAPET*ISEVESSAHG 192
++G PPRG PE ++ AHG
Sbjct: 42 ELGEVPPRGHPEARGEQLHEQAHG 65
>02_04_0185 -
20748206-20748405,20749067-20749232,20749373-20749471,
20749487-20749561,20749663-20749743,20750121-20750274,
20750330-20750425,20750518-20750727,20750746-20750957
Length = 430
Score = 25.8 bits (54), Expect = 4.8
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 1 VPVSYLKKQNNDD*FVLRSRVGALQSCSTHS*GAKPQSQ-LKVGRSPPRGAPET*ISEVE 177
+P S LKK N D + S GAL++ ST KP S ++ + PP + +VE
Sbjct: 325 LPASALKKDNAPDVAMKESSDGALETQST-----KPSSDGQQINKEPPSVVEDNKQEDVE 379
>04_04_0558 -
26231752-26231837,26231929-26231974,26232059-26232139,
26232250-26232336,26232459-26232548,26232650-26232841,
26232973-26233179
Length = 262
Score = 25.4 bits (53), Expect = 6.4
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +1
Query: 70 LQSCSTHS*GAKPQSQLKVGRSPP-RGAPET*ISEVESSAHGPYA*SMTASRSGSRAPSS 246
L SC THS GA+ + PP G P+ +E S A + RS R P S
Sbjct: 23 LPSCRTHSAGARCRGFAAAHSQPPAAGRPDEPAAE-PSPKQPEIAQTQNLRRSRRRGPGS 81
>01_01_0874 -
6840708-6840947,6841063-6841149,6841217-6841281,
6841976-6842096,6842207-6842350
Length = 218
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 247 VMMARDSQIERPSSTRRRDRVLRIQLQKFRFQVLPV 140
+ RDS+ + TR DRVLR F+ +L V
Sbjct: 145 IFRKRDSKNSKAQKTRPEDRVLRATQGHFKNGILDV 180
>09_03_0044 -
11855569-11855664,11855775-11855891,11856572-11856682,
11856768-11856874,11857182-11857221,11857328-11857408,
11857578-11857631,11857800-11857860,11857984-11858029,
11858276-11858352,11858448-11858563,11858654-11858890
Length = 380
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 143 GEHLKPEFLKLNPQHTVPTPSR 208
G+HL+P +NPQH P +R
Sbjct: 144 GDHLEPVLDLVNPQHEGPWGAR 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,671,450
Number of Sequences: 37544
Number of extensions: 111123
Number of successful extensions: 222
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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