Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G16
         (252 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    27   2.3  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    27   2.3  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    27   2.3  
AC084158-24|AAM15622.1|  245|Caenorhabditis elegans Hypothetical...    25   7.1  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 17/49 (34%), Positives = 18/49 (36%)
 Frame = +1

Query: 97  GAKPQSQLKVGRSPPRGAPET*ISEVESSAHGPYA*SMTASRSGSRAPS 243
           G+ P      GR PPRG P     E   S  GP        R G R  S
Sbjct: 347 GSPPTGSPPTGR-PPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKSS 394


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 17/49 (34%), Positives = 18/49 (36%)
 Frame = +1

Query: 97  GAKPQSQLKVGRSPPRGAPET*ISEVESSAHGPYA*SMTASRSGSRAPS 243
           G+ P      GR PPRG P     E   S  GP        R G R  S
Sbjct: 368 GSPPTGSPPTGR-PPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKSS 415


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 17/49 (34%), Positives = 18/49 (36%)
 Frame = +1

Query: 97  GAKPQSQLKVGRSPPRGAPET*ISEVESSAHGPYA*SMTASRSGSRAPS 243
           G+ P      GR PPRG P     E   S  GP        R G R  S
Sbjct: 353 GSPPTGSPPTGR-PPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKSS 400


>AC084158-24|AAM15622.1|  245|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.6 protein.
          Length = 245

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 149 HLKPEFLKLNPQH--TVPTPSR*RPLDL 226
           HL+P+ LK   QH  T PT  + R +D+
Sbjct: 132 HLQPDILKFIKQHNETFPTAQQQRMIDI 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,370,143
Number of Sequences: 27780
Number of extensions: 85948
Number of successful extensions: 162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)