Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G16
         (252 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05260.1 68415.m00554 lipase class 3 family protein contains ...    27   2.3  
At3g57360.1 68416.m06385 expressed protein                             26   4.0  
At3g05610.1 68416.m00623 pectinesterase family protein contains ...    26   4.0  
At2g21530.1 68415.m02562 forkhead-associated domain-containing p...    26   4.0  
At5g63830.1 68418.m08012 zinc finger (HIT type) family protein c...    25   5.3  
At3g19570.2 68416.m02482 expressed protein contains Pfam domain,...    25   5.3  
At3g19570.1 68416.m02481 expressed protein contains Pfam domain,...    25   5.3  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    25   5.3  
At2g30860.1 68415.m03761 glutathione S-transferase, putative ide...    25   7.0  
At3g56130.1 68416.m06238 biotin/lipoyl attachment domain-contain...    25   9.2  
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea...    25   9.2  
At1g77290.1 68414.m09001 tetrachloro-p-hydroquinone reductive de...    25   9.2  

>At2g05260.1 68415.m00554 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 358

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 147 SPWWRSTNFKL 115
           SPWW S NFKL
Sbjct: 57  SPWWESFNFKL 67


>At3g57360.1 68416.m06385 expressed protein 
          Length = 240

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 88  HS*GAKPQSQLKVGRSPPRGAPET*ISEVE 177
           HS G+ P+ Q +VG S  R   E  ++EVE
Sbjct: 27  HSGGSVPKLQFRVGSSKARWITELGMAEVE 56


>At3g05610.1 68416.m00623 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 669

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 100 AKPQSQLKVGRSPPRGAPET*ISEVESSAHGPYA*SMTASRSGS 231
           A P+S +KV  S    +PE+  S  E+S   P +  M AS   S
Sbjct: 620 ASPESSIKVSSSTETASPES--SFTEASTASPESSIMVASTESS 661


>At2g21530.1 68415.m02562 forkhead-associated domain-containing
          protein / FHA domain-containing protein 
          Length = 209

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 86 VEQLCRAPTRERSTNQSSLFCFF 18
          + QLC       S++ SSLFCF+
Sbjct: 5  ISQLCSRVKFSSSSSSSSLFCFY 27


>At5g63830.1 68418.m08012 zinc finger (HIT type) family protein
           contains Pfam profile: PF04438 HIT zinc finger
          Length = 343

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 188 CAEDSTSEIQVSGAPRGGDRPTLS 117
           C ED      VS  PRG D P +S
Sbjct: 118 CVEDEEETTVVSEIPRGPDTPLIS 141


>At3g19570.2 68416.m02482 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 222 SRGRHRLGVGTVC*GFNFRNSGFRCSPWWRSTNFKLR 112
           + G H  G G V    +   +G   + +W+ TN +LR
Sbjct: 300 TNGAHECGSGEVSKTRSLPRNGMASTKFWQETNSRLR 336


>At3g19570.1 68416.m02481 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 627

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 222 SRGRHRLGVGTVC*GFNFRNSGFRCSPWWRSTNFKLR 112
           + G H  G G V    +   +G   + +W+ TN +LR
Sbjct: 300 TNGAHECGSGEVSKTRSLPRNGMASTKFWQETNSRLR 336


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
           similarity to MRP-like ABC transporter gb|U92650 from A.
           thaliana and canalicular multi-drug resistance protein
           gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 247 VMMARDSQIERPSSTRRRDRVLRIQLQKFRFQV 149
           +M A+D ++ + S   R  RVL++Q  + R++V
Sbjct: 476 LMTAKDERMRKTSECLRNMRVLKLQAWEDRYRV 508


>At2g30860.1 68415.m03761 glutathione S-transferase, putative
           identical to GB:Y12295
          Length = 215

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 143 GEHLKPEFLKLNPQHTVP 196
           GEH +P +L L P  TVP
Sbjct: 37  GEHKQPAYLALQPFGTVP 54


>At3g56130.1 68416.m06238 biotin/lipoyl attachment domain-containing
           protein low similarity to SP|Q06881 Biotin carboxyl
           carrier protein of acetyl-CoA carboxylase (BCCP)
           {Anabaena sp.}; contains Pfam profile PF00364:
           Biotin-requiring enzyme
          Length = 281

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -1

Query: 174 NFRNSGFRCSPWW----RSTNFKLRLRFSALAVSRTAL 73
           N+  SG  C P W    R++N++L LR  A   S T +
Sbjct: 30  NWSASGNSCVPRWRLSNRNSNYRLVLRAKAAKSSTTTI 67


>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
           family protein similar to CPY (GI:3096961) {Chironomus
           thummi}; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
          Length = 2471

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 235 RDSQIERPSSTRRRDRVLRIQLQKFRFQVLP 143
           + S +ER S   R DR+  + L++ R +++P
Sbjct: 8   KPSGLERGSGDPRTDRIDHLPLRQLRSEIVP 38


>At1g77290.1 68414.m09001 tetrachloro-p-hydroquinone reductive
           dehalogenase-related contains similarity to
           tetrachloro-p-hydroquinone reductive dehalogenase
           GI:148689 from [Flavobacterium sp.]
          Length = 266

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 143 GEHLKPEFLKLNPQHTVP 196
           G+H+ P F ++NP   +P
Sbjct: 36  GKHMDPSFFRMNPNAKLP 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,055,299
Number of Sequences: 28952
Number of extensions: 79696
Number of successful extensions: 199
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 12,070,560
effective HSP length: 62
effective length of database: 10,275,536
effective search space used: 215786256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)