Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_G15
(217 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 24 3.1
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 23 4.1
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po... 23 4.1
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 23 5.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 23 5.5
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha... 23 7.2
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 23 7.2
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 23 7.2
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 23 7.2
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb... 23 7.2
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 22 9.6
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 22 9.6
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 22 9.6
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 165 RRWYCLNISSVPWDHV 118
RRW N+ S+PW HV
Sbjct: 59 RRW---NLQSLPWQHV 71
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 23.4 bits (48), Expect = 4.1
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +3
Query: 9 LPEIYRKDDVHLRSSSC 59
+PE+Y+++DV L C
Sbjct: 721 IPEVYKREDVDLVRKGC 737
>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = -2
Query: 117 EARARRCSGGVSAGKRHHRCNCYYVSEHHL 28
E RC+ S GK C C + E+ L
Sbjct: 249 EGGCPRCNSASSCGKELDTCLCLHAEENAL 278
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 23.0 bits (47), Expect = 5.5
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +3
Query: 162 ALHHHYSCQLGKSWSF 209
+LH +C+ GKSW +
Sbjct: 501 SLHDSGTCETGKSWMY 516
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 23.0 bits (47), Expect = 5.5
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 88 PTGAPPSACFDMIPGHAADVQTVPAPY----TITTAVSSVKAGHS 210
P PSA +P A VPAP +++T SSV + HS
Sbjct: 1217 PPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHS 1261
>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
Exg3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 464
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 66 HRCNCYYVSEHHLFYKFQGGRL 1
H +YV +HH ++ F GG L
Sbjct: 238 HESEGFYVVDHHSYFCF-GGEL 258
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 22.6 bits (46), Expect = 7.2
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +3
Query: 150 DSTSALHHHYSCQLGKSWS 206
D+T + +Y C L K+W+
Sbjct: 8 DTTPKIVFYYKCLLNKNWN 26
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 154 VPAPYTITTAVSSVKAGHSID 216
VP+P+ +TA SS + +S+D
Sbjct: 184 VPSPFGASTASSSSRRVYSVD 204
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 97 APPSACFDMIPGHAADVQTV 156
+P AC ++ GH A V +V
Sbjct: 334 SPAEACMHVLRGHLASVNSV 353
>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 160 LVLSEHQQRALGSCRSTR*AVLRWGKRW*AP 68
LV H+ + + S+ RWGKR+ AP
Sbjct: 15 LVSLAHRNSKVFALASSNAVAQRWGKRFYAP 45
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1
Query: 124 IPGHAADVQTV 156
IPGH ADV+T+
Sbjct: 392 IPGHRADVRTL 402
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 156 YCLNISSVPWDHVEA 112
Y +ISSVP+ HV++
Sbjct: 514 YAASISSVPFSHVKS 528
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 65 WWRLPALTPPEHRLARAS 118
WW LPA+ EHR + +S
Sbjct: 275 WW-LPAVASKEHRKSLSS 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.129 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 877,115
Number of Sequences: 5004
Number of extensions: 13786
Number of successful extensions: 32
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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