Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G14
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   1e-11
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              65   4e-11
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              57   1e-08
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              49   4e-06
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)        38   0.007
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)                     31   0.81 
SB_20930| Best HMM Match : F5_F8_type_C (HMM E-Value=5.2e-08)          28   5.7  
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)           28   7.6  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 8/221 (3%)
 Frame = +2

Query: 5   CTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTE 184
           CTH++Y  A I   T K+ +   N D       Y+ I +LK + P L+  L VGG +   
Sbjct: 427 CTHIVYAFAKIDPATNKIGTYEWNDD-----RLYKEINDLKLKNPSLKTLLAVGGWNHES 481

Query: 185 DP-QKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFWHSI 361
            P   ++ ++ S   RT F +S L L+++Y FDG DL W+ P  +               
Sbjct: 482 GPVSPFSQMVASKSNRTTFISSLLQLSDKYDFDGFDLDWEYPASR--------------- 526

Query: 362 KKTFGTTPVDDKESEHREGFTALVREM------KQALNVKPNMQLVISVLPNVNS-SIYF 520
               G +P  DK+      FT L  EM      K A   KP M L  +V     +    +
Sbjct: 527 ----GNSPPQDKQH-----FTILCEEMLDAFKRKAADTDKPRMLLTAAVSAGHGTVDAAY 577

Query: 521 DVPSIINLVDIVNIQAFDYYTPERNPXEADYTAPIYAPQNR 643
           +V  +  ++D +N+  +D + P   P    +TA +  P ++
Sbjct: 578 EVHKLAGILDWINLMTYDLHGP-WEPYTGHHTALVGPPGDK 617


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 35/115 (30%), Positives = 57/115 (49%)
 Frame = +2

Query: 5   CTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTE 184
           CTH+L+  A +   T+K+    EN      H  Y+ I  LK+  P+L+  + VGG    E
Sbjct: 50  CTHILFSFAKVNQTTHKLDIYEEN-----DHELYQRINALKKINPKLKTQIAVGGWTHEE 104

Query: 185 DPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSF 349
               ++ ++ + + R  F  SA+     +GFDG+DL W+ P  +    +S  G F
Sbjct: 105 KNSPFSKMVATKEKRAIFIKSAIETLRTHGFDGLDLDWEYPGMRGGSPKSDKGRF 159



 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 33/115 (28%), Positives = 56/115 (48%)
 Frame = +2

Query: 5   CTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTE 184
           CTH+++  + +   T+ M    +N D D     Y+ I  LK+  P+L+  + VGG    E
Sbjct: 435 CTHVIHSFSKVNLTTHVMEKYEKN-DFDL----YKRINALKKINPKLKTQIAVGGWTHEE 489

Query: 185 DPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSF 349
               ++ ++ + + R  F  SA+      GFDG+DL W+ P  +    +S  G F
Sbjct: 490 KNSPFSKMVATKEKRAIFIKSAIETLRTNGFDGLDLDWEYPGMRGGSPKSDKGRF 544


>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 270

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
 Frame = +2

Query: 5   CTHLLYKSAGI-QADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDT 181
           CTHL+Y  A I Q +   M   N+    D+ +  + A   LK++ P+L+  L VGG +  
Sbjct: 48  CTHLMYSFAKINQKNELAMYEWND----DKLYPRFNA---LKQKNPELKTLLAVGGWNHE 100

Query: 182 EDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 307
                ++ ++++   R  F +S + +   +GFDG+DL W+ P
Sbjct: 101 NANSPFSRMVKTAATRKVFIDSVIRILRTWGFDGLDLDWEYP 142


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 29/101 (28%), Positives = 48/101 (47%)
 Frame = +2

Query: 5   CTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTE 184
           CTH++Y  A + AD  K+     N       A Y+ + +LK     ++  L VGG +   
Sbjct: 50  CTHIVYAFAKMNADNSKLAMFEWN-----DAAMYKKVNDLKSS-SNMKTLLAVGGWNMGS 103

Query: 185 DPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 307
            P  +  ++ +   R  F + A+L    + FDG+DL W+ P
Sbjct: 104 GP--FQDMVSTASRRKIFIDDAILFLRNHMFDGLDLDWEYP 142


>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 569

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 20/68 (29%), Positives = 37/68 (54%)
 Frame = +2

Query: 104 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 283
           Y+   +LK + P L+  L VGG +       ++ ++ +  +R  F +S++ +  Q+ FDG
Sbjct: 187 YKEFNDLKLKNPGLKTLLAVGGWNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQWNFDG 246

Query: 284 IDLSWQLP 307
            DL W+ P
Sbjct: 247 FDLDWEYP 254


>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
          Length = 561

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +2

Query: 104 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 283
           Y+ + +LK     ++  L VGG +    P  +  ++ +   R  F + A+L    + FDG
Sbjct: 2   YKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDG 58

Query: 284 IDLSWQLP 307
           +DL W+ P
Sbjct: 59  LDLDWEYP 66


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 19/50 (38%), Positives = 31/50 (62%)
 Frame = +2

Query: 386 VDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSI 535
           +DDK++E +E FT  V      + + PN ++VI++L N + SI F V S+
Sbjct: 703 LDDKKNEPQETFTVTVSSADSNIEISPN-EVVITILDN-DVSIGFMVTSV 750



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +2

Query: 386  VDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSI 535
            +DDKE E  E FT  +    + +NVKP     + +  N ++SI F++ ++
Sbjct: 2157 IDDKEIEDLEAFTVTLSSDDKRVNVKPETG-TVKITDN-DASIGFELATV 2204


>SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 902

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
 Frame = -2

Query: 507 LFTFGKTLITNCILGFTLSACFISRTRAVKPSLCSDSLS---STGVVP-NVFLMLCQKDP 340
           ++TFG   + +C  G+T   C I++ + V PSL +  +     T  VP +  ++ C K  
Sbjct: 290 IYTFGNETVCDCNPGYTGQRCTINK-QCVVPSLNTGEIGGKYETERVPGSKMVLFCNKG- 347

Query: 339 ILERIFFGFLFGNCQDRSIPSKPYCS 262
               I   + FG C D S  S PY S
Sbjct: 348 ----ISLSWRFGVCVDGS--SSPYWS 367


>SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)
          Length = 1958

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +2

Query: 365  KTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSI 535
            K F    +DD   E+ E F  +       + V P++  V  V+ + ++ I FDVPSI
Sbjct: 950  KDFVIALIDDDVVENPEKFAVVFSTDDPRVTVDPSIPFVTVVITDNDAMIGFDVPSI 1006


>SB_20930| Best HMM Match : F5_F8_type_C (HMM E-Value=5.2e-08)
          Length = 172

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = -2

Query: 366 FLMLCQKDPILERIFFGFLFGNCQDRSIPSKPYCSARRRAELVKAVRACGDSNKRLYFCG 187
           +L    +D   E++F G  +G          P+  AR    +VK+V      +  +Y C 
Sbjct: 90  YLPYLDEDGTKEKVFNG-AWGRYLAFKRRIYPHVFARYIRIIVKSVFRSASIHVEIYGCV 148

Query: 186 SSVSSSPPTVKN 151
           S +SSSPP  +N
Sbjct: 149 SRLSSSPPPREN 160


>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
          Length = 1301

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 383  PVDDKESEHREGFTALVREM 442
            P DDK +E R  FT+L++EM
Sbjct: 1066 PEDDKPAEQRMSFTSLLKEM 1085


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 359 IKKTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIY 517
           +KK F  + V     EH+ GF  +      A + K +++LV S  P + +SIY
Sbjct: 306 LKKPFKQSEVVKNTKEHQNGFPFVAATTSGAAHWKTSVELVNS--PALGTSIY 356


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,037,114
Number of Sequences: 59808
Number of extensions: 377061
Number of successful extensions: 1222
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)