Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_G12
(371 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 30 0.10
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 0.94
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 26 1.6
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 26 2.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 2.9
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 25 5.0
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 25 5.0
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 24 6.7
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 6.7
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 24 6.7
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S... 24 6.7
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 24 6.7
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 24 6.7
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 30.3 bits (65), Expect = 0.10
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 96 NSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPI 203
N V DG + VVI P F+ P+N S N+ P+
Sbjct: 402 NHSVTGDGEAKQVVITMPSTHFT-PANNSSANHSPL 436
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 27.1 bits (57), Expect = 0.94
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +3
Query: 186 GNYEPI--STGPAFVDFNHPNYPPKRYDXPS-RPGG 284
G+Y P ST P + +P+YPP Y S RP G
Sbjct: 117 GSYPPTQPSTQPLPQSYGYPSYPPAGYRGGSARPSG 152
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 26.2 bits (55), Expect = 1.6
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +3
Query: 129 HVVIANPDPFFSQPSNGPSGNY-EPISTGPAF-VDFNHPNYPPKRYDXPS 272
HV ++NPD P + S NY P+ A +F+ P + +Y P+
Sbjct: 478 HVSLSNPDFAIGSPMSQDSSNYSSPLHRRKASDSNFSDPRFDDLKYLSPN 527
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 25.8 bits (54), Expect = 2.2
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Frame = +3
Query: 156 FFSQPSNGP----SGNYEPISTGPAFVDF 230
F + P+N P SG+Y PI P F F
Sbjct: 1560 FVTPPTNSPYAEVSGDYNPIHVSPTFAAF 1588
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 2.9
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +3
Query: 162 SQPSNGPSGNYEPISTGPAFVDFNHPNYPP 251
S P N P P+S PA + P PP
Sbjct: 265 SSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 955
Score = 24.6 bits (51), Expect = 5.0
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = -1
Query: 335 HFSKFKIAYLNGDNYLSPPGARGXVVSLGWIIGMIEIDERRSSAYGFI 192
H S+ + YLN YL+P L I+ + + S + F+
Sbjct: 549 HLSQLHMFYLNAKTYLAPDPLMEVAQGLAHIVDIQPVANVYQSVHSFL 596
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 24.6 bits (51), Expect = 5.0
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -3
Query: 120 CRPMEHHYCPPRELCLRQP 64
C P H+C LCL+ P
Sbjct: 25 CSPQTSHWCKYPALCLKSP 43
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 24.2 bits (50), Expect = 6.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 156 FFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 260
+ +Q GPS NY + V+ +PNY + Y
Sbjct: 151 YIAQLVGGPSINYSTAAMLLGAVNIGNPNYEVQNY 185
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 24.2 bits (50), Expect = 6.7
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +3
Query: 171 SNGPSGNYEPISTGPAF--VDFNHPNYPPKRYDXPSRP 278
+ G S P + PA D++ P+Y Y PS+P
Sbjct: 71 AGGSSTGSTPRTASPAVGNQDYSKPSYSQPSYSQPSQP 108
Score = 23.8 bits (49), Expect = 8.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 108 PSDGNSDHVVIANPDPFFSQPSNGP 182
P+ GN D+ + P +SQPS P
Sbjct: 85 PAVGNQDYSKPSYSQPSYSQPSQPP 109
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 24.2 bits (50), Expect = 6.7
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 111 SDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 221
SD DH V + P F S+ P + E S P F
Sbjct: 1443 SDVEDDHDVAKSTAPDFETSSHRPERSSEKKSPSPVF 1479
>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
Pac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 24.2 bits (50), Expect = 6.7
Identities = 9/34 (26%), Positives = 14/34 (41%)
Frame = +3
Query: 150 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 251
+P +PS+ P + P +F YPP
Sbjct: 99 EPVIEEPSSHPKNQKNQENNEPTSEEFEEGEYPP 132
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 24.2 bits (50), Expect = 6.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 151 SGFAITTWSLLPSDGTPLL 95
S F + W++LP G P+L
Sbjct: 899 SCFVLRIWNMLPETGVPIL 917
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 24.2 bits (50), Expect = 6.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 131 RCYCEPGSFLLSTIKRS*RKL*THKHWTGVRR 226
+C EP S STI+ HW G+R+
Sbjct: 444 KCLTEPTSRFQSTIEIQKHPFFKRLHWNGLRK 475
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,703
Number of Sequences: 5004
Number of extensions: 31994
Number of successful extensions: 82
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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