Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G12
         (371 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)                 30   0.69 
SB_41909| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05)                   27   3.7  
SB_44915| Best HMM Match : VWA (HMM E-Value=0)                         27   4.9  
SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)                   27   4.9  
SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)                  27   4.9  
SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         27   4.9  
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)              27   4.9  
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_8894| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.4  
SB_4940| Best HMM Match : DUF755 (HMM E-Value=2.3)                     27   6.4  
SB_20719| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)                    27   6.4  
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.4  
SB_35132| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  

>SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)
          Length = 427

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -1

Query: 329 SKFKIAYLNGDNYLSPPGA---RGXVVSLGWIIGMIEIDERRSSAYGFI 192
           +KF +A  + D+  SPP     R  ++S GWI+  IEI+ R  S   +I
Sbjct: 119 NKFVLASQSIDHERSPPVPGIIRAQIMSSGWIVEPIEINGRECSMVWYI 167


>SB_41909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 890

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = +3

Query: 150 DPFFSQPSN---GPSGNYEPI---STGPAFVDFNHPNYPPKRYDXPSRPGGGKV 293
           DPFF  PS+   GPS    P+   S G +F  F+  + PP +    SRP    V
Sbjct: 89  DPFFGPPSDGGFGPSDRGSPVPRPSCGSSF--FSERDPPPGKGSPGSRPNSSGV 140


>SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05)
          Length = 790

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = +3

Query: 138 IANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDXPSRPGGGK 290
           IAN  P F +       NY P+  G   ++   P   P   D PSR G  K
Sbjct: 690 IANVVPIFKKGKRSSPNNYRPVVYGTVDIE-REPFLVP--MDRPSRNGNSK 737


>SB_44915| Best HMM Match : VWA (HMM E-Value=0)
          Length = 541

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 135 VIANPDPFFSQP-SNGPSGNYEPISTG 212
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 258 VIAEPDPCLSKPCANG--GTCSPISSG 282


>SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)
          Length = 318

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 135 VIANPDPFFSQP-SNGPSGNYEPISTG 212
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 54  VIAEPDPCLSKPCANG--GTCSPISSG 78


>SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)
          Length = 228

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = +3

Query: 90  VDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDXP 269
           VD+SGV  D  S  +V A  +P FSQ S G      P+   P        ++  + YD  
Sbjct: 161 VDSSGVAGDQRSSLLVSATLNPLFSQ-SLGSVSFGIPLIPSPTLPSTEKDSF--QEYDQL 217

Query: 270 SRP 278
           S P
Sbjct: 218 SPP 220


>SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = +3

Query: 90  VDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDXP 269
           VD+SGV  D  S  +V A  +P FSQ S G      P+   P        ++  + YD  
Sbjct: 90  VDSSGVAGDQRSSLLVSATLNPLFSQ-SLGSVSFGIPLIPSPTLPSTEKDSF--QEYDQL 146

Query: 270 SRP 278
           S P
Sbjct: 147 SPP 149


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 135 VIANPDPFFSQP-SNGPSGNYEPISTG 212
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 409 VIAEPDPCLSKPCANG--GTCSPISSG 433


>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
          Length = 406

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 162 SQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDXPSRP 278
           S PS+    +  P    P++  + HP +P   Y  PS P
Sbjct: 107 SYPSSHIQASLLPHIQHPSYPTYKHPPFPHPTYKHPSYP 145


>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 147 PDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDXPSRP 278
           P+P +  P N P   Y P    P +    +P YPP  Y  P  P
Sbjct: 128 PNPPYPPPPNAP---YPPSPNAP-YPPPPNPPYPPPLYPPPPNP 167


>SB_8894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 222 VDFNHPNYPPKRYD 263
           VD NHPNY P+ Y+
Sbjct: 32  VDLNHPNYLPETYN 45


>SB_4940| Best HMM Match : DUF755 (HMM E-Value=2.3)
          Length = 173

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 119 AVRWNTTIVHHVNSVCGSHGQY 54
           A RW T   H+   +CG HG+Y
Sbjct: 55  ATRWTTN--HNCYHICGHHGRY 74


>SB_20719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 105 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 260
           +P DGN     IAN D     PSN P  ++  +    A V+     +PP  Y
Sbjct: 87  IPEDGNGCAAYIANVD-----PSNKPGSHWLAVYFTYANVNGESFRFPPHAY 133


>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
          Length = 2057

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +3

Query: 153 PFFSQPSNGPSGNYE--PISTGPAFVDFNHPNYPPKRYDXPS 272
           P FS PS    G Y+  P+ T P+       +Y P   D PS
Sbjct: 43  PLFSDPSMTRIGTYDYRPLFTDPSMTRIGTYDYRPLFTDDPS 84


>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 848

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 129 GHYCRPMEHHYCPPRELCLR 70
           GH C+P     CPP   C+R
Sbjct: 805 GHQCQPDTCDSCPPNSHCMR 824


>SB_35132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 180 PSGNYEPISTGPAFVDFNHPNYPPKRYDXPSRPGGGKVIVSIK 308
           PSG Y     G  +V+      PPK +   ++PG  K+  S++
Sbjct: 144 PSGTYYIELDGKLWVENKDSLQPPKMHPLRNKPGHFKLATSLR 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,328,094
Number of Sequences: 59808
Number of extensions: 259342
Number of successful extensions: 648
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)