Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G12
         (371 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70756-7|CAA94794.2|  199|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    29   1.1  
Z70756-8|CAA94795.2|  212|Caenorhabditis elegans Hypothetical pr...    28   1.9  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    27   4.3  
AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical...    27   4.3  
AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    27   5.7  
AF003141-14|AAM48549.1|  362|Caenorhabditis elegans Hypothetical...    27   5.7  
AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical...    27   5.7  
AF003386-6|AAK82897.1|  527|Caenorhabditis elegans Hypothetical ...    26   7.5  
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr...    26   9.9  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    26   9.9  
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond...    26   9.9  
AF003386-2|AAB54255.1|  527|Caenorhabditis elegans Hypothetical ...    26   9.9  

>Z70756-7|CAA94794.2|  199|Caenorhabditis elegans Hypothetical
           protein T06E4.8 protein.
          Length = 199

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +3

Query: 135 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 251
           V A P P F+ P+  P     PI  GPAF     P   P
Sbjct: 110 VFAAPRPVFASPALAPVAPMAPILRGPAFAYAPSPVLAP 148


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 144  NPDPFFSQPS-NGPSGNYEPISTGPAFVDFNHPNYPPKRYDXPSRPGG 284
            NP P    PS NGPS   +P   GP+    N P+ P K    PS P G
Sbjct: 939  NPGPGPGPPSPNGPSDPNKPSPNGPSPNGPNGPSDPNK--PGPSGPNG 984


>Z70756-8|CAA94795.2|  212|Caenorhabditis elegans Hypothetical
           protein T06E4.9 protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +3

Query: 135 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 251
           V A P P F+ P+  P     P+  GPAF     P   P
Sbjct: 123 VFAAPRPVFAAPALAPVAPMAPVLRGPAFAYAPSPVLAP 161


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +3

Query: 93  DNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPA 218
           D SG P  G          DP  +QPS GP G + P    P+
Sbjct: 291 DPSGAPPSGGPPGPF----DPSGAQPSGGPPGPFNPSGAPPS 328


>AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical
           protein K12H6.6b protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 123 YCRPMEHHYCPPRELCLRQPWP 58
           +C P+++ Y  P  + L  PWP
Sbjct: 282 HCSPLQYPYSNPYSILLDAPWP 303


>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 177 GPSGNYEPISTGPAFVDFNHPNYPPKRYDXPSRP 278
           GP  ++ P    P F     P+ PP+ Y  P RP
Sbjct: 131 GPPQHFPPGPPRPHFPGPPGPHRPPEHYPGPPRP 164


>AF003141-14|AAM48549.1|  362|Caenorhabditis elegans Hypothetical
           protein W02D3.11b protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 147 PDPFFSQPSNGPSGNYEPIS 206
           P PF S P   P G Y+P S
Sbjct: 219 PPPFASAPQTAPRGAYDPYS 238


>AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical
           protein W02D3.11a protein.
          Length = 549

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 147 PDPFFSQPSNGPSGNYEPIS 206
           P PF S P   P G Y+P S
Sbjct: 219 PPPFASAPQTAPRGAYDPYS 238


>AF003386-6|AAK82897.1|  527|Caenorhabditis elegans Hypothetical
           protein F59E12.4a protein.
          Length = 527

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 117 GNSDHVVIANPDPFFSQPSNGPSG 188
           GN D  VI N DPF    S G  G
Sbjct: 476 GNDDIPVIPNGDPFSGSSSGGSGG 499


>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical
           protein R13G10.1 protein.
          Length = 1469

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 225 DFNHPNYPPKRYDXPSRPGGGK-VIVSIKISNFK 323
           D  +   PPK  D  S P G + +I++I + NFK
Sbjct: 69  DLLNVQIPPKYEDQISDPDGNRMIILNIYVENFK 102


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 138 IANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDXPSR 275
           +A P P    PS  P+  + PISTGP++     P  P      PSR
Sbjct: 439 VAPPPP----PSAPPTIKF-PISTGPSYSSTTPPTTPKPAPPPPSR 479


>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
           condensation protein protein.
          Length = 1469

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 225 DFNHPNYPPKRYDXPSRPGGGK-VIVSIKISNFK 323
           D  +   PPK  D  S P G + +I++I + NFK
Sbjct: 69  DLLNVQIPPKYEDQISDPDGNRMIILNIYVENFK 102


>AF003386-2|AAB54255.1|  527|Caenorhabditis elegans Hypothetical
           protein F59E12.5a protein.
          Length = 527

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 117 GNSDHVVIANPDPFFSQPSNGPSG 188
           GN D  VI N DPF    S G  G
Sbjct: 476 GNDDIPVIPNGDPFSGSSSGGSRG 499


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,258,114
Number of Sequences: 27780
Number of extensions: 197239
Number of successful extensions: 547
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)