Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G12
         (371 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    35   0.020
At4g36980.1 68417.m05240 expressed protein                             31   0.32 
At5g14540.1 68418.m01704 proline-rich family protein contains pr...    27   3.0  
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family...    27   3.0  
At2g34790.1 68415.m04272 FAD-binding domain-containing protein s...    27   3.0  
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera...    27   3.0  
At5g59460.1 68418.m07452 scarecrow-like transcription factor 11 ...    27   4.0  
At1g14700.1 68414.m01757 purple acid phosphatase, putative conta...    27   4.0  
At5g44400.1 68418.m05436 FAD-binding domain-containing protein s...    27   5.3  
At4g24150.1 68417.m03465 expressed protein ; expression supporte...    26   7.0  
At3g12420.1 68416.m01547 hypothetical protein                          26   7.0  
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R...    26   7.0  
At4g22740.2 68417.m03281 glycine-rich protein                          26   9.2  
At4g22740.1 68417.m03280 glycine-rich protein                          26   9.2  
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    26   9.2  

>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 34.7 bits (76), Expect = 0.020
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 135 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDXPSRPGG 284
           ++A P P+   P+ GP     P+S+ PA       N+P   Y  P  PGG
Sbjct: 245 MMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMPGG 294


>At4g36980.1 68417.m05240 expressed protein
          Length = 560

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 114 DGNSDHV-VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDXPSRPGGGK 290
           +G  DH   I+ P   +     G SG+       P F  ++ P  PP + D  SRP  G+
Sbjct: 321 NGRGDHSDEISKPKIEYITEFGGGSGDMR----SPKFEGYSPPRSPPSQSDLLSRPSPGR 376

Query: 291 VIVSIKI 311
           ++ ++ +
Sbjct: 377 ILEALHV 383


>At5g14540.1 68418.m01704 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 547

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +3

Query: 147 PDPFFSQPSNGPSG--NYEPISTGPAFVDFNHPNYPPKRYDXP 269
           P P  S P N P    ++ P  + P+   +N P  PP  YD P
Sbjct: 357 PYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNAPPTPPSMYDGP 399


>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
           protein
          Length = 421

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 168 PSNGPSGNYEPISTGPAFVDFNHP-NYPPKRYDXP 269
           PS+ PS ++ P  TGP+   + HP ++ P   D P
Sbjct: 236 PSSYPSNDHLPPPTGPSDSPYPHPYSHQPYHQDPP 270



 Score = 25.8 bits (54), Expect = 9.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 144 NPDPFFSQPSNGPSGNYEPISTGP 215
           NP+P++S P + P+ +    S+ P
Sbjct: 316 NPEPYYSSPHSAPAPSSTSFSSAP 339


>At2g34790.1 68415.m04272 FAD-binding domain-containing protein
           similar to  SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 532

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 297 QLPFPPRGERVXRIAWVDNWDD 232
           ++PFP R   + +I W+  W D
Sbjct: 424 EIPFPHRNGTLFKIQWLSTWQD 445


>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 456

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 7   SDTIRQ*KLSCFSSSPYWPWLP 72
           S  I + + SC  SSP+ PW+P
Sbjct: 96  SKIIEEKRYSCIISSPFTPWVP 117


>At5g59460.1 68418.m07452 scarecrow-like transcription factor 11
           (SCL11) identical to cDNA scarecrow-like 11 (SCL11)
           mRNA, partial cds gi:4580526
          Length = 172

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +3

Query: 96  NSGVPSDGNSD--HVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDXP 269
           N G PS  +S+      + P+    +PS    G+ +   +     + N PN  P+ +D P
Sbjct: 82  NGGNPSSSSSNGGKKSFSEPESSKVEPSGETDGDLKRKQSEVVSEEQNRPNKSPRSFDKP 141

Query: 270 S 272
           S
Sbjct: 142 S 142


>At1g14700.1 68414.m01757 purple acid phosphatase, putative contains
           Pfam profile: PF00149 calcineurin-like phosphoesterase;
           similar to purple acid phosphatase (GI:20257479)
           [Arabidopsis thaliana]
          Length = 366

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -1

Query: 113 RWNTTIVHHVNSVCGSHGQYGEEEKH 36
           +W   I HH     G HG   E EKH
Sbjct: 239 KWKIVIGHHTIKSAGHHGNTIELEKH 264


>At5g44400.1 68418.m05436 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 537

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 297 QLPFPPRGERVXRIAWVDNWDD*NRRTPVQCLWVHN 190
           Q+PFP R   + ++ +V +W D ++R      W+ +
Sbjct: 425 QIPFPHRKGVLFKVQYVTSWLDSDKRPSRHINWIRD 460


>At4g24150.1 68417.m03465 expressed protein ; expression supported
           by MPSS
          Length = 493

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 75  NRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 221
           N+ +   +SG+ +   S    +   DPFFS  S+G          G AF
Sbjct: 102 NQAYTSSHSGMFTPAGSGSAAVTVADPFFSLSSSGEMRRSMNEDAGAAF 150


>At3g12420.1 68416.m01547 hypothetical protein
          Length = 308

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
 Frame = +3

Query: 141 ANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHP------NYPPKRYDXPSRP 278
           ANP P      + P  +Y+P      +   +HP      N PP RYD    P
Sbjct: 73  ANPPPDRYYSDHHPPRSYDPNPPPNRYYSDHHPPRSYDRNPPPNRYDANDLP 124


>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
           helicase SDE3 [Arabidopsis thaliana] GI:13811296
          Length = 1002

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/47 (29%), Positives = 17/47 (36%)
 Frame = +3

Query: 99  SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHP 239
           SG  SD     +       F    ++G SG Y P   GP  V    P
Sbjct: 4   SGYKSDDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGPVVVSVPFP 50


>At4g22740.2 68417.m03281 glycine-rich protein
          Length = 356

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 150 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDXPSRPGG 284
           DPFF+QP  G  G ++    GP+   F   +  P+ +   ++P G
Sbjct: 59  DPFFTQPFGG--GMFQSNFFGPSMNPFAEMHRLPQGFIENNQPPG 101


>At4g22740.1 68417.m03280 glycine-rich protein
          Length = 356

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 150 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDXPSRPGG 284
           DPFF+QP  G  G ++    GP+   F   +  P+ +   ++P G
Sbjct: 59  DPFFTQPFGG--GMFQSNFFGPSMNPFAEMHRLPQGFIENNQPPG 101


>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 144 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 251
           +P P  S PS+ P  +  P S  P  +  + P  PP
Sbjct: 37  SPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPP 72



 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 144 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 251
           +P P  S PS+ P  +  P S  P  +  + P  PP
Sbjct: 86  SPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPP 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,803,982
Number of Sequences: 28952
Number of extensions: 181710
Number of successful extensions: 473
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)