Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G11
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    30   0.19 
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    29   0.44 
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   0.58 
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    28   0.77 
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    28   0.77 
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    27   1.0  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    27   1.3  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    27   1.3  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   2.3  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    26   3.1  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    26   3.1  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    26   3.1  
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb...    25   4.1  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    25   5.4  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   5.4  
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    24   9.5  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        24   9.5  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    24   9.5  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    24   9.5  

>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 29.9 bits (64), Expect = 0.19
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +3

Query: 3   DLDSDVEINL--LDQKDNCDKENNLPINKNNEISENTTEHFGNRESNNNLNLATGQTINE 176
           D++SDVE     LD++ +  K+     +K N + E    +  ++ +    N    +  +E
Sbjct: 38  DMESDVEDAFFHLDRELHDLKQQISSQSKQNFVLERDVRYLDSKIALLIQNRMAQEEQHE 97

Query: 177 VLHRLEDNYNEVDNSF 224
              RL DNYN V  SF
Sbjct: 98  FAKRLNDNYNAVKGSF 113


>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 45  DNCDKENNLPINKNNEISENTTEHFGNRESNNNLNL 152
           D+  KEN L +NK NE S     +F    S+    +
Sbjct: 183 DSSQKENTLTLNKENEFSSKDDSNFAFHNSSTKTTI 218


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
 Frame = +3

Query: 9   DSDVEINLLDQKDNCDKENNLPINKNN-EISENTTEHFGNRESNNNLNLATGQTINEVLH 185
           +S +  ++L   DN +KEN L +N N  ++ + +       + N  L +   + +     
Sbjct: 460 NSGINASVLTNADNLEKENLLLVNNNAFKVDDRSVSSVALDDHNRQLQMNV-EELEGKKA 518

Query: 186 RLEDNYNEVDNSFLVPVVNSNVDTHVDQARIKPI 287
            L    N +D  F+   +N+      DQ + K +
Sbjct: 519 DLTSKINRLDKDFV--KLNTTYSLLTDQVKTKQL 550


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 27.9 bits (59), Expect = 0.77
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
 Frame = +1

Query: 271  PELNQLKKRLAFVNLK-FYYWIQK----KLLTFLC 360
            P+L QL +R  F NLK F+ WI       LL FLC
Sbjct: 1032 PQLYQLGQRSEFFNLKRFWSWITNGFYHSLLLFLC 1066


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 27.9 bits (59), Expect = 0.77
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 54  DKENNLPINKNNEISEN-TTEHFGNRESNNNLNLATGQTINE 176
           + EN+ P +  NE+ E  TT+H  N+E++ N      Q  NE
Sbjct: 142 ETENSDPKSAENEVLEGETTQHSNNKEAHPNTEENKEQEDNE 183


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 69  LPINKNNEISENTTEHFGNRESNNNLNLATGQTINEV-LHRLEDNYNEVDNS 221
           +P + N +++     H  + E    +NLA  +  NEV + R   N+ EVD +
Sbjct: 603 IPSDNNEKVTTLPAGHVPSEEKGKFINLAMHELQNEVSILRSSVNHREVDEA 654


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 357 MSSPYIRCEKYQERVVELY 413
           MSSPY+ CEK + ++ + +
Sbjct: 464 MSSPYVECEKMERKISDAF 482


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 33  LDQKDNCDKENNLPINKNNEISENTTEHFG-NRESNNNLNLATGQTINEVLHRLEDNYNE 209
           L QKD  +K +N  ++ +    +   + FG +R  NN L +  G  +   L  L+   N 
Sbjct: 314 LQQKDKAEKFSNKAVSSSTTEIKLKKKKFGKHRLPNNPLEIKLGDELTSSLRELKPEGNL 373

Query: 210 VDNSFL 227
             + +L
Sbjct: 374 FADRYL 379


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 12/107 (11%)
 Frame = +3

Query: 15   DVEINLLDQKDNCDKENNLPINKNNE-ISENTTEH---FGNRESNNNLNLATG-----QT 167
            + EI+ L +     KENN+P  K  E + +N  +    F  ++ N N  L          
Sbjct: 1364 EAEIHRLKEHRPSGKENNIPAVKTTEPVLKNIPQRKTIFDLQQRNANQALYENLKRDYDR 1423

Query: 168  INEVLHRLEDNYNEVDNSFLVPVVNSNVDTHVDQA---RIKPIEEEI 299
            +N   H LE   NE+  + + P        HV+ A    +K ++++I
Sbjct: 1424 LNLEKHNLEKQVNELKGAEVSPQPTGQSLQHVNLAHAIELKALKDQI 1470


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 36  DQKDNCDKENNLPINKNNEISENTTEHFGNRESNNN 143
           + K +  KE+   ++KN E   N  E+   RE NN+
Sbjct: 118 EHKTDVHKESVSKLSKNLESRNNRDENSAKREKNNS 153


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 90  EISENTTEHFGNRESNNNLNLATGQTINEVLHRLEDNY 203
           ++S N    FG+  + N  N++  +T  E LH+L+  +
Sbjct: 278 QVSPNEQSQFGDSSNINQENISLWETELEKLHQLKKEH 315


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/58 (22%), Positives = 27/58 (46%)
 Frame = +3

Query: 42  KDNCDKENNLPINKNNEISENTTEHFGNRESNNNLNLATGQTINEVLHRLEDNYNEVD 215
           K   +++ + P++ +NE   +TT + G   + N ++        E    +E+N  E D
Sbjct: 51  KITTNEKQSSPVDSHNESPNDTTINKGEDGNENEVDNVNNNDKKEDEDNVEENEEEAD 108


>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 33  LDQKDNCDKENNLPINKNNEISENTTEH 116
           +D K    +EN LP  +  +I EN  EH
Sbjct: 1   MDLKGLLHEENELPSIEKRKIDENAVEH 28


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +3

Query: 129 ESNNNLNLATGQTINEVLHRLEDNYNEVDNSFLVPVVNSNVDTHVDQARIKPIEE 293
           ++N N+ L+  Q INE   + +D + E+D   ++ + NS +D +      + +EE
Sbjct: 367 KTNWNMWLSQVQKINE---KEKDKFYEIDEQSILTLNNSEMDKYFQWYEKEFVEE 418


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 9   DSDVEINLLDQKDNCDKENNLPINKN-NEISENTTEHFGNRESNNNL 146
           D+D  +  +DQ  N     +L IN+N N+ + N      N  SN+++
Sbjct: 125 DTDASLTQMDQLSNTVSVKDLSINRNTNKKALNAVSPSLNLSSNSSV 171


>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 15/72 (20%), Positives = 31/72 (43%)
 Frame = +3

Query: 6   LDSDVEINLLDQKDNCDKENNLPINKNNEISENTTEHFGNRESNNNLNLATGQTINEVLH 185
           +D+     L ++KD  ++E        NE+ +N  +     E N+ L+        E +H
Sbjct: 124 IDAHDTTPLDEEKDELEEERIAEDIAQNEVEQNIDDVEDLEEVNDTLDANAESPQIETIH 183

Query: 186 RLEDNYNEVDNS 221
             +   N +++S
Sbjct: 184 LTDATGNPIEDS 195


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 26/110 (23%), Positives = 45/110 (40%)
 Frame = +3

Query: 78   NKNNEISENTTEHFGNRESNNNLNLATGQTINEVLHRLEDNYNEVDNSFLVPVVNSNVDT 257
            N N+E   N+    G++E    L     + + E+ +++E+   EV    +  ++     T
Sbjct: 1002 NGNSEEERNSVVLRGDKEIVEALETRLLEIVEELKNQVEEKI-EVPQRCISSIIGRMGST 1060

Query: 258  HVDQARIKPIEEEIGFC*P*ILLLDPEEITDFSMSSPYIRCEKYQERVVE 407
              D  R       I    P +L  DPEE    ++      CEK +E + E
Sbjct: 1061 RRDIERKTSTMLNI----PNVL--DPEETVTITIVGSPENCEKAKEMIQE 1104


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 120 GNRESNNNLNLATGQTINEVLHRLEDNYNEVDNSFLVPVVN 242
           G  ES   L +     INE++HR   N NE++   ++  V+
Sbjct: 352 GEIESLEKLKVKKSTMINEIVHRY--NINEINEEGIMTEVS 390


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +3

Query: 9   DSDVEINLLDQKDNCDKENNLPINKNNEISENTTEHFGNRESNN 140
           +SD+  ++    +N D ENN+ ++K   ++   +   G+    N
Sbjct: 490 ESDIFDSIETNLENLDIENNIALDKRTHLASLLSSLLGSLRDKN 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,645,792
Number of Sequences: 5004
Number of extensions: 31772
Number of successful extensions: 125
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)