Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_G11
(453 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0115 + 20288220-20288303,20289223-20289706,20290160-202903... 29 1.7
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 29 1.7
04_01_0252 - 3329712-3331061 29 2.3
12_01_1076 + 11184047-11184270,11186178-11186352,11186554-111866... 27 5.3
02_02_0246 - 8243584-8243696,8243848-8244415,8244500-8244685,824... 27 5.3
12_02_0380 - 18356210-18356329,18356415-18356673,18356754-183569... 27 7.1
03_05_0765 - 27536666-27536767,27536854-27536976,27537161-275373... 27 7.1
02_04_0500 + 23500769-23500951,23501200-23501285,23501442-235014... 27 7.1
>11_06_0115 +
20288220-20288303,20289223-20289706,20290160-20290393,
20291811-20292770,20292931-20293404,20293406-20294664
Length = 1164
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 63 NNLPINKNNEISENTTEHFGNRESNNNLNLATGQTINEVL 182
N+L ++ NN + T EHF N S ++L++ +N V+
Sbjct: 614 NHLDLSYNNLAGDITEEHFANLRSLKYIDLSSNDPLNIVV 653
>04_04_1694 - 35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 115 CSVVFSDISLFLFIGRLFSLSQLSFWSNKLISTSLSRS 2
CS+ S + LFL G+ ++L Q+ WS + +S S
Sbjct: 977 CSLPKSSLGLFLQSGKSYTLCQVEAWSAEFLSRKCDAS 1014
>04_01_0252 - 3329712-3331061
Length = 449
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +3
Query: 54 DKENNLPINKNNEISENTTEHFGNRESNNNLNLATGQTINEVLHRLEDNYNE 209
+ E N N + ++NTT H G+ +++L+ A +N + ++D+ NE
Sbjct: 288 EDERNADNNNSTTNADNTTNHHGSCPIHDHLDQAC--NVNSIHQDIDDSINE 337
>12_01_1076 +
11184047-11184270,11186178-11186352,11186554-11186637,
11186712-11186953,11187029-11187266,11187814-11187893,
11187968-11188052,11188148-11188279,11188358-11188471,
11189550-11189594,11189840-11189924,11190043-11190102,
11190178-11190317
Length = 567
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 81 KNNEISENTTEHFGNRESNNNLNLATGQTINEVLHRLEDNYNEVDNSFL 227
KN E+S++ EH G + N T +T +LH D E +S L
Sbjct: 488 KNLELSDDP-EHPGIAQVKKKNNKPTRRTFKSILHEFADTEEEPQSSSL 535
>02_02_0246 -
8243584-8243696,8243848-8244415,8244500-8244685,
8244772-8244804,8244901-8244999,8245091-8245330,
8246130-8246447,8246589-8246646,8246788-8246846,
8246888-8246960,8247004-8247219,8247326-8247495
Length = 710
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Frame = +3
Query: 57 KENNLPINKNNEISENTTEHFGNRESNNNLNLATGQTINEVL-----HRLEDNY-NEVDN 218
+EN+ ++ N EI + T EH S ++ + + +T+N + H+ E+N + +
Sbjct: 570 EENHDEVHTNCEIKKRTEEHCIQINSEDSSSTYSQRTMNATVQTGSPHKTEENITRRIPD 629
Query: 219 SFLVPVVNSNVDTH 260
+ + N V H
Sbjct: 630 EYYIKEANKRVTIH 643
>12_02_0380 -
18356210-18356329,18356415-18356673,18356754-18356917,
18357235-18357397,18357465-18359020
Length = 753
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +3
Query: 48 NCDKENNLPINKNNEISENTTEHFGNRESNNNLNLATGQTINEVLHRLEDNYNEV 212
N +++N L N + E + +GN L+L +E+L +LED++ +
Sbjct: 604 NKEQKNQLLYNITSRALELSEHQYGNYVVQYILDLHISWATDEILDKLEDHFGSL 658
>03_05_0765 -
27536666-27536767,27536854-27536976,27537161-27537355,
27538144-27538272,27539025-27539066,27539067-27539229,
27539357-27539492,27539883-27540287,27540419-27540505,
27540877-27541054
Length = 519
Score = 27.1 bits (57), Expect = 7.1
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +3
Query: 147 NLATGQTINEVLH-RLEDNYN-EVDNSFLVPVVNSNVDTHVDQARIKPIEEEIGF 305
N G+ ++ VL+ RL D Y+ E+ SF + + VD HV++ + P+E I F
Sbjct: 348 NEIDGEGMSFVLYFRLSDAYSKELPPSF-IENIRKLVDDHVEKVKAFPMETTIPF 401
>02_04_0500 +
23500769-23500951,23501200-23501285,23501442-23501490,
23501560-23501746,23502214-23502371,23502447-23502515,
23502692-23502750,23503140-23503176,23503493-23503564,
23503694-23503841,23504124-23504219,23505042-23505181,
23505304-23505419,23505614-23505659,23505747-23505923
Length = 540
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 271 PELNQLKKRLAFVNLKFYYWIQKKLLTF 354
PE ++L KR+ +V Y WI L F
Sbjct: 513 PEADELSKRMGYVQTHGYVWIPPTLSKF 540
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,137,237
Number of Sequences: 37544
Number of extensions: 153128
Number of successful extensions: 437
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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