Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_G11
(453 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-... 35 0.030
At3g18810.1 68416.m02389 protein kinase family protein contains ... 31 0.36
At2g22795.1 68415.m02704 expressed protein 30 0.84
At1g28400.1 68414.m03492 expressed protein similar to E6 (GI:100... 29 1.1
At1g33680.1 68414.m04166 KH domain-containing protein similar to... 29 1.9
At1g18570.1 68414.m02316 myb family transcription factor (MYB51)... 29 1.9
At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative ... 28 3.4
At4g12270.1 68417.m01944 copper amine oxidase family protein con... 28 3.4
At5g64390.2 68418.m08088 KH domain-containing RNA-binding protei... 27 4.5
At5g64390.1 68418.m08089 KH domain-containing RNA-binding protei... 27 4.5
At3g13430.1 68416.m01688 zinc finger (C3HC4-type RING finger) fa... 27 4.5
At5g62110.1 68418.m07796 hypothetical protein 27 5.9
At5g22800.1 68418.m02666 aminoacyl-tRNA synthetase family protei... 27 5.9
At1g34270.1 68414.m04253 exostosin family protein contains Pfam ... 27 5.9
At5g25300.1 68418.m03001 F-box family protein PF0064: F-box doma... 27 7.8
At5g16680.1 68418.m01951 PHD finger family protein contains Pfam... 27 7.8
At4g22960.1 68417.m03314 hypothetical protein contains Pfam doma... 27 7.8
At4g09340.1 68417.m01543 SPla/RYanodine receptor (SPRY) domain-c... 27 7.8
>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
factor-related similar to CCAAT-box-binding transcription
factor (CCAAT-binding factor) (CBF) (Swiss-Prot:Q03701)
[Homo sapiens], GB:P53569 [Mus musculus]
Length = 1056
Score = 34.7 bits (76), Expect = 0.030
Identities = 23/86 (26%), Positives = 42/86 (48%)
Frame = +3
Query: 9 DSDVEINLLDQKDNCDKENNLPINKNNEISENTTEHFGNRESNNNLNLATGQTINEVLHR 188
DSDVE D+ DN + EN L +++ +N E G ++L+ G+ E++
Sbjct: 904 DSDVEFEAGDESDNEEIENML-----DDVDDNAVEEEGGEYDYDDLDGVAGEDDEELVAD 958
Query: 189 LEDNYNEVDNSFLVPVVNSNVDTHVD 266
+ D E+D + +++ D +VD
Sbjct: 959 VSD--AEMDTDMDMDLIDDEDDNNVD 982
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 31.1 bits (67), Expect = 0.36
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +3
Query: 36 DQKDNCDKENNLPINKNNEISENTTEHFGNRESNNNLNLATG 161
+ KDN + NN N NN N + GN NNN N G
Sbjct: 100 NNKDNNNNGNNNNGNNNNGNDNNGNNNNGNNNDNNNQNNGGG 141
Score = 27.9 bits (59), Expect = 3.4
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +3
Query: 45 DNCDKENNLPINKNNEISENTTEHFGNRESNNNLNLATGQTINEVLHRLEDNYNEVDNS 221
+N D NN N NN+ + + N +NNN N G N + +N N N+
Sbjct: 80 NNNDNNNNNNGNNNNDNNNGNNKDNNNNGNNNNGNNNNGNDNNGNNNNGNNNDNNNQNN 138
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 36 DQKDNCDKENNLPINKNNEISENTTEHFGNRESNNN 143
D + +K+NN N NN + N ++ GN + NN
Sbjct: 95 DNNNGNNKDNNNNGNNNNGNNNNGNDNNGNNNNGNN 130
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 36 DQKDNCDKENNLPINKNNEISENTTEHFGNRESNNN 143
+ D + NN N NN + N + GN + NNN
Sbjct: 71 NNNDGNNGNNNNDNNNNNNGNNNNDNNNGNNKDNNN 106
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 48 NCDKENNLPINKNNEISENTTEHFGNRESNNNLNLATGQTIN 173
N NN N NN + N + N+++NNN N G N
Sbjct: 76 NNGNNNNDNNNNNNGNNNNDNNNGNNKDNNNNGNNNNGNNNN 117
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 29.9 bits (64), Expect = 0.84
Identities = 19/78 (24%), Positives = 34/78 (43%)
Frame = +3
Query: 54 DKENNLPINKNNEISENTTEHFGNRESNNNLNLATGQTINEVLHRLEDNYNEVDNSFLVP 233
+K+ N I+++ E E + N E N +EV+H E+ +E +NS V
Sbjct: 270 EKKENRGIDESEESKEKDIDEKANIEEARENNYKGDDASSEVVHESEEKTSESENSEKVE 329
Query: 234 VVNSNVDTHVDQARIKPI 287
+ V+ + IK +
Sbjct: 330 DKSGIKTEEVEDSVIKSV 347
>At1g28400.1 68414.m03492 expressed protein similar to E6
(GI:1000090) [Gossypium barbadense]
Length = 335
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +3
Query: 84 NNEISEN-TTEHFGNRESNNNLNLATGQTINE--VLHRLEDNYNEVDNS 221
NN+ EN E F N +NNN N + + E EDN V NS
Sbjct: 169 NNKYDENYAKEEFNNNNNNNNYNYKYDENVKEESFPENNEDNKKNVYNS 217
>At1g33680.1 68414.m04166 KH domain-containing protein similar to
FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
sapiens]
Length = 759
Score = 28.7 bits (61), Expect = 1.9
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +3
Query: 60 ENNLPINKNNEISENTTEHFGNRESNNNLNLATGQTIN--EVLHRLEDNYNEVDNSFLVP 233
EN+ + E +E + N L +TI+ E +++EDN DN + P
Sbjct: 74 ENSGDVESKEEGTEKPIAQSDENQDGNPLIEKVQETIDAEESDNKMEDNGKPEDNQLVTP 133
Query: 234 VVNSNVDTHVDQAR 275
V ++ D V++++
Sbjct: 134 EVVTSQDVSVEESK 147
>At1g18570.1 68414.m02316 myb family transcription factor (MYB51)
contains PFAM profile: PF00249
Length = 352
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 54 DKENNLPINKNNEI--SENTTEHFGNRESNNNLNLATGQTINEVLHRLEDNYNE 209
DK NLP +N + S++ ++ +++N N L++ +N+V +R N+
Sbjct: 135 DKSENLPEKQNVNLTTSDHDLDNDKAKKNNKNFGLSSASFLNKVANRFGKRINQ 188
>At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative
similar to GT-2 factor [Arabidopsis thaliana GI:416490
Length = 619
Score = 27.9 bits (59), Expect = 3.4
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +3
Query: 42 KDNCDKENNLPINKNNEISENTT--EHFGNRESNNNLNLATGQTINEVLHRLEDN 200
K+ ++E N NN + NT +H GN + N N + E H DN
Sbjct: 147 KEKFEEEERRYFNSNNNNNNNTNDHQHIGNYNNKGN-NYRIFSEVEEFYHHGHDN 200
>At4g12270.1 68417.m01944 copper amine oxidase family protein
contains similarity to copper amine oxidase [Cicer
arietinum] gi|3819099|emb|CAA08855; contains Pfam
domains PF02728: Copper amine oxidase, N3 domain and
PF02727: Copper amine oxidase, N2 domain
Length = 460
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +3
Query: 15 DVEINLLDQKDNCDKENNLPINKNNEISENTTEHFGNRESNNNLNLATGQTINEVL 182
D+ + +DQ D+ E+ PI + E+ + F N + N +N + G + +V+
Sbjct: 158 DLSTSRVDQADSPVPESGYPIVTSEEMDSAASAPFSNADFNRTIN-SRGVNLTDVI 212
>At5g64390.2 68418.m08088 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 824
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 105 TTEHFGNRESNNNLNLATGQTINEVLHRLEDNYNEVDNSFL 227
TTE F +R+S+N L++ + Q+++ + ++SFL
Sbjct: 635 TTERFYDRQSDNPLSIGSHQSVSNPATNSSSLHRRSEDSFL 675
>At5g64390.1 68418.m08089 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 857
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 105 TTEHFGNRESNNNLNLATGQTINEVLHRLEDNYNEVDNSFL 227
TTE F +R+S+N L++ + Q+++ + ++SFL
Sbjct: 635 TTERFYDRQSDNPLSIGSHQSVSNPATNSSSLHRRSEDSFL 675
>At3g13430.1 68416.m01688 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 315
Score = 27.5 bits (58), Expect = 4.5
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +3
Query: 36 DQKDNCDKENNLPINKNNEISENTTEHFGNRESNNNLNLATGQTINEVLHRLEDNYNEVD 215
D D+ D+ N+ I+ +++ E R S +NL G +L E+N + D
Sbjct: 87 DDGDDGDQNNDGEIDITHQLEE--IRRIRTRHSTAIVNLLQGIRAG-LLIESENNEDNPD 143
Query: 216 NSFLVPVVNS 245
NS LV ++NS
Sbjct: 144 NSELVVLINS 153
>At5g62110.1 68418.m07796 hypothetical protein
Length = 691
Score = 27.1 bits (57), Expect = 5.9
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 10/144 (6%)
Frame = +3
Query: 9 DSDVEINLLDQKDNCDKENNLPINKNNEISENTTEH--FGNRESN------NNLNLATGQ 164
D+ E N + + + NNL IN N+ S T + N E N N +N G
Sbjct: 515 DNQFERNAILAGYSIEDINNLSINNVNDNSNEETLNSIAANNEMNFTILDVNTINQVNGN 574
Query: 165 TINEVLHRLEDNYNEVDNSFLVPVVNSNVDTHVDQARIKPI--EEEIGFC*P*ILLLDPE 338
+ E L+ + N +E++ + L + VD + ++ + I E+ F + +++ E
Sbjct: 575 SNEETLNSIVAN-SEINFTTLDVNTINQVDNNFNEETLNSIAANSEMNFTTLDVNIINEE 633
Query: 339 EITDFSMSSPYIRCEKYQERVVEL 410
E M I ++ +E V L
Sbjct: 634 EQGAVDMMDIVITFDEEEEDVAAL 657
>At5g22800.1 68418.m02666 aminoacyl-tRNA synthetase family protein
contains Pfam profiles: PF01411 tRNA synthetases class
II (A), PF02272 DHHA1 domain
Length = 978
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/68 (22%), Positives = 32/68 (47%)
Frame = +3
Query: 96 SENTTEHFGNRESNNNLNLATGQTINEVLHRLEDNYNEVDNSFLVPVVNSNVDTHVDQAR 275
SE + + R + +++L E + + YN+ ++ L P+ N+DT + R
Sbjct: 244 SELYYDFYPERGYDEDVDLGDDTRFIEFYNLVFMQYNKTEDGLLEPLKQKNIDTGLGLER 303
Query: 276 IKPIEEEI 299
I I +++
Sbjct: 304 IAQILQKV 311
>At1g34270.1 68414.m04253 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 477
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -3
Query: 130 SLLPKCSVVFSDISLFLFIGRLFSLSQLSFWSNKLIS 20
S P CS+ S+FL LF +S L F+SN LIS
Sbjct: 10 STRPLCSIP----SIFLSFSLLFVVSLLFFFSNSLIS 42
>At5g25300.1 68418.m03001 F-box family protein PF0064: F-box domain;
similar to F-box protein family, AtFBX7 (GI:20197899)
[Arabidopsis thaliana]
Length = 464
Score = 26.6 bits (56), Expect = 7.8
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = +3
Query: 42 KDNCDKENNLPINKNNEISENTTEHFGNR-ESNNNLNLA-TGQTINEVLHRLEDNYNEVD 215
K+ D ++PI KN + + + + NNL ++ T Q+I ++ E+ + +VD
Sbjct: 120 KNGEDHYRDIPIRKN--VCKELQDLYDMLLHGGNNLYISKTRQSIRKLRFFEEEGFIDVD 177
Query: 216 NSFLVPVVNSNVDTHVDQAR 275
NS ++P + ++D AR
Sbjct: 178 NSEILPF--RKISFYIDGAR 195
>At5g16680.1 68418.m01951 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1290
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 69 LPINKNNEISENTTEHFGNRESNNNLNLATGQTIN 173
L +N ++E+ +N + GN E+NNN L +G N
Sbjct: 1174 LDLNDDSEMVDNLSP-LGNDENNNNRRLISGTVPN 1207
>At4g22960.1 68417.m03314 hypothetical protein contains Pfam domain
PF04424: Protein of unknown function (DUF544)
Length = 487
Score = 26.6 bits (56), Expect = 7.8
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = +3
Query: 39 QKDNCDKENNLPINKNNEISENTTEHFGNRESNNNLNLATGQTINEVLHRLEDNYNEVDN 218
+ ++CD N + + +E E FGN E+ N+ + T I+ LE N++
Sbjct: 269 ESEDCDVGNKTNVGEEVSSTELGDETFGNVETENSSKM-TDVLISVEKTNLESTKNDI-I 326
Query: 219 SFLVPVVNSNV 251
S + +VN+++
Sbjct: 327 SEAITLVNADL 337
>At4g09340.1 68417.m01543 SPla/RYanodine receptor (SPRY)
domain-containing protein low similarity to RanBPM [Homo
sapiens] GI:15080674; contains Pfam profile PF00622:
SPRY domain
Length = 447
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 66 NLPINKNNEISENTTEHFGNRESNNNLNLATGQTI 170
++P N + + +N H+G E+++ L+LAT T+
Sbjct: 221 SIPSNMSLGLVKNYLLHYGYEETHHALDLATNSTL 255
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,100,116
Number of Sequences: 28952
Number of extensions: 146618
Number of successful extensions: 556
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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