Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G10
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0935 - 22738221-22738328,22739207-22739237,22739901-227400...    27   7.1  
01_07_0310 + 42660671-42660795,42660996-42661026,42662958-426630...    27   7.1  
01_03_0107 - 12613491-12613538,12613906-12614139,12614682-126147...    27   7.1  
01_01_0513 + 3736893-3737047,3737298-3737340,3737631-3737765,373...    27   7.1  
03_05_0407 - 23906388-23906966,23907028-23907915,23908141-239087...    27   9.4  
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510...    27   9.4  

>07_03_0935 -
           22738221-22738328,22739207-22739237,22739901-22740095,
           22740693-22740782,22740900-22741037,22741959-22742108,
           22743589-22744766
          Length = 629

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
 Frame = +3

Query: 165 YLHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDIKMFMWNEPVKN 344
           ++  N P W     YG+  +R  E L+  + +    +  E L     +++ F   E VK 
Sbjct: 344 FMVWNSPQW----AYGVRHQRGLESLLRQHPEACVVMLSETL-----ELEFFQ--EFVKE 392

Query: 345 GYWPKIRLPNGDEM--PVRQNNFVPVTSENLKLKMLLDDVEQMIR 473
           GY   + LPN DE+      ++FV V +E  K K       +++R
Sbjct: 393 GYKVAVALPNLDELLEGTLTHDFVSVWNEWRKTKYYPLHYSELVR 437


>01_07_0310 +
           42660671-42660795,42660996-42661026,42662958-42663079,
           42663428-42663544,42663881-42663950
          Length = 154

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 339 KNGYWPKIRLPNGDEMPVRQNNFVPVTSENLKLKMLLDDVEQMIRE 476
           K  +W ++     D  P   N  +PV + N K K       QM+R+
Sbjct: 100 KVNFWRRLSQMKADHEPSASNKRLPVINHNYKSKRYATLTPQMMRQ 145


>01_03_0107 -
           12613491-12613538,12613906-12614139,12614682-12614713,
           12616021-12616176,12617972-12618159,12618242-12618324,
           12618821-12618976,12620320-12621162,12621197-12621550,
           12621962-12623125
          Length = 1085

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 93  RRSLSEDDKYSYFTEDVDLNTYMYYLHMN 179
           + SL  + KY   +E  DL  + YY H+N
Sbjct: 652 KNSLINNTKYIVLSESGDLQVWRYYKHVN 680


>01_01_0513 +
           3736893-3737047,3737298-3737340,3737631-3737765,
           3737879-3738010,3738129-3738278,3738353-3738373,
           3738468-3738675,3738796-3738877,3738983-3739088,
           3739245-3739358,3739458-3739685
          Length = 457

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +3

Query: 306 DIKMFM--WNEPVKNGYWPKIRLPNGDEMPVRQNNFVPVTSENLKLKM 443
           D K F+  W E   N  WP + +P G    ++Q  F       +K++M
Sbjct: 109 DTKAFLAAWEETCNNEGWPILIIPGGRTFLLKQIKFNGSCKSPIKIQM 156


>03_05_0407 -
           23906388-23906966,23907028-23907915,23908141-23908753,
           23908858-23909021
          Length = 747

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 354 PKIRLPNGDEMPVRQNNFVPVTSENLKLKMLLDDVEQMIREGILTGKIER-RDGT 515
           PK R+P      V ++N VP+T + L  +   +D+E MI      G++++  DGT
Sbjct: 18  PKSRIPKLGGSEVHESNIVPITVDKLTPEQ-KNDLEAMISS--KDGEVQQVSDGT 69


>01_06_0192 +
           27347369-27348826,27349124-27349264,27349350-27351081,
           27353739-27354606,27354784-27355957
          Length = 1790

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 372 NGDEMPVRQNNFVPVTSENLKLKMLLDDVEQMIREGIL 485
           NGDE+P  +NN    T  + + + LL   EQ + E  L
Sbjct: 306 NGDELPCNENNAEDGTGSSHEHEHLLVQNEQTVEESNL 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,803,141
Number of Sequences: 37544
Number of extensions: 234541
Number of successful extensions: 520
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)