Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G10
         (530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)           33   0.19 
SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)             32   0.25 
SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)                 31   0.58 
SB_3946| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.58 
SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_8348| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  
SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)         27   9.5  

>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
          Length = 721

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +3

Query: 168 LHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDIKMFMWNEPVKN 344
           +H N   WMT ++ G   +RQG ++ +     L +L  +++   +   K   +   VKN
Sbjct: 351 VHTNDKPWMTQKIKGWIAKRQGALVKHGKESPLFKLWRDKVGKAIASAKHVFYRTKVKN 409


>SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)
          Length = 839

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 291 SHKMCDIKMFMWNEPVKNGYWPKI-RLPNGDEMPVRQNNFVP 413
           +HK   IK+    E V+N ++ K  R PNG+++     NFVP
Sbjct: 91  THKKVHIKLVTEMESVRNRWFDKFGRYPNGEDIDRMYKNFVP 132


>SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
          Length = 1799

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +3

Query: 168 LHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDIKMFMWNEPVKN 344
           +H N   WMT ++ G   +RQG ++       L +L  +++   +   K   +   VKN
Sbjct: 299 VHTNDKPWMTQKIKGWIAKRQGALVKQGKESPLFKLWRDQVGKAIASAKHVFYRTKVKN 357


>SB_3946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +3

Query: 168 LHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDIKMFMWNEPVKN 344
           +H N   WMT ++ G   +RQG ++       L +L  +++   +   K   +   VKN
Sbjct: 337 VHTNDKPWMTQKIKGWIAKRQGALVKQGKESPLFKLWRDQVGKAIASAKHVFYRTKVKN 395


>SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +3

Query: 168 LHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDIKMFMWNEPVKN 344
           +H N   WMT ++ G   +RQG ++ +     L +L   ++   +   K   +   VKN
Sbjct: 314 VHTNDKPWMTQKIKGWIAKRQGALVKHGKESPLFKLWRYKVGKAIARAKHVFYRTKVKN 372


>SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 150 NTYMYYLHMNYPYWMTDEVYGLNKERQGE 236
           NT  YY+H+NY  + +D  Y +     G+
Sbjct: 66  NTSSYYIHLNYKDYESDYFYTIGSYNSGD 94


>SB_8348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 69  VIDWRKGVRRSLSEDDKYSYFTEDVDLNTY 158
           +++WR G+  SLSEDD+  +  E + L+ Y
Sbjct: 77  LLNWRSGI--SLSEDDQMCFHHEKLYLSRY 104


>SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
          Length = 1414

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +3

Query: 171  HMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDIKMFMWNEPVKN 344
            H +   WMT ++  L  +RQ  + MY     L +    ++   + + K   +N  VKN
Sbjct: 968  HSSDKAWMTSKIKALIAKRQKFLAMYGKDSPLFKSVRNKVLLTVKNSKRAFYNNKVKN 1025


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,005,974
Number of Sequences: 59808
Number of extensions: 280648
Number of successful extensions: 653
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)