Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G07
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    31   0.12 
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    27   2.0  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    27   2.0  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    26   3.5  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   6.1  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    25   6.1  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    25   6.1  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   6.1  

>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 308 RVSWKLYPIWYKNKVYFKILNTY 376
           R SW+ YP+W + K+Y K+L  Y
Sbjct: 308 RKSWETYPLWVQVKLYEKVLVPY 330


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 422 DHKAWGANEEDTWRHEWYFRPVVHD 496
           DHK W   E  +  H+ + RPV H+
Sbjct: 331 DHKPWKHEEHCSCHHDKFSRPVPHN 355



 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 422 DHKAWGANEEDTWRHEWYFRPVVHD 496
           DHK W   E  +  H+ + RPV H+
Sbjct: 219 DHKPWKHEEHCSCHHDKFPRPVPHN 243



 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 422 DHKAWGANEEDTWRHEWYFRPVVHD 496
           DHK W   E  +  H+ + RPV H+
Sbjct: 248 DHKPWKHEEHCSCHHDKFPRPVPHN 272


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 194 DPVLITNKRDELALKLELKTDYAG 265
           D + I NKR   ALK  LK +Y G
Sbjct: 231 DSIAILNKRGPYALKYSLKPEYKG 254


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/47 (21%), Positives = 26/47 (55%)
 Frame = +2

Query: 437 GANEEDTWRHEWYFRPVVHDSQILFYIYNRHYEQALKLGRAVDDYGD 577
           G  E  +  H W F+P  H+ +    +Y+ ++++A +  + + ++G+
Sbjct: 70  GEREGSSLTHSWTFQPGKHNQR----LYSDNFQEAQRQWKRLQEWGE 112


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 439 PPRFMVTGVISLHFKFQVLRMICVQNFKVHLILIP 335
           P RF+V  V ++     + R++ +QN+   +I+ P
Sbjct: 373 PVRFVVLCVYAIIGCLSIARILAIQNYNAPMIIYP 407


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 53  VISSVVNKLLLEGQPNVVEYAYSLWY 130
           V+    NK+ ++G+PNV     + WY
Sbjct: 22  VLIDAFNKVTIDGKPNVQHQQPTYWY 47


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 434 WGANEEDTWRHEWYFRPVVHDSQILFYIYNRHYE 535
           WG+ E    RH+WY +    D+ I+ Y+ + +YE
Sbjct: 306 WGSGEGPFDRHDWYVQR--KDNSIVRYVID-YYE 336


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 296 KTGPRVSWKLYPIWYKNKVYFKILNTYH 379
           K  P+V+WK + IW   K   K ++++H
Sbjct: 28  KASPKVNWKTHIIWRSLK-NVKCIDSFH 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,056
Number of Sequences: 5004
Number of extensions: 48956
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)