Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G07
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1157 + 24765719-24766544,24766569-24766637,24767031-247671...    30   1.2  
06_01_0664 + 4850445-4850879,4853155-4854186                           29   2.0  
05_06_0202 - 26339467-26339494,26339579-26339624,26339742-263397...    28   4.7  
07_03_0369 - 17356806-17356934,17357145-17357278,17357989-173582...    28   6.2  

>08_02_1157 +
           24765719-24766544,24766569-24766637,24767031-24767180,
           24767296-24768503
          Length = 750

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 533 RNVCCKCRTIFDYHVRLDGNTTHVSKCLLR*PPTLYG 423
           R   CKCR+ +D +  +      +++C+L  PP  +G
Sbjct: 277 RGYACKCRSGYDGNPYMPNGCQDINECMLPNPPLCFG 313


>06_01_0664 + 4850445-4850879,4853155-4854186
          Length = 488

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 335 WYKNKV-YFKILNTYHTQYLKLEVKADDAGDHKAWGANEEDTWRHEWYF 478
           W+  K+  F + + Y    L  +++ DD G   A G  E   W+H W F
Sbjct: 153 WHFEKMGMFSVQSAYKIA-LAEQLRKDDHGASSATGNGERALWKHIWSF 200


>05_06_0202 -
           26339467-26339494,26339579-26339624,26339742-26339785,
           26340729-26340851,26341010-26341124,26341447-26342207,
           26342305-26342711,26342798-26342900,26344642-26345144
          Length = 709

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 419 GDHKAWGANEEDTWRHEWYFRPVVHD 496
           GD + W A E+  W H+ +    +HD
Sbjct: 172 GDRRLWNAKEDQAWVHDRFDEMNLHD 197


>07_03_0369 -
           17356806-17356934,17357145-17357278,17357989-17358247,
           17358322-17358410,17358644-17358794,17358889-17359032,
           17359358-17359477,17359595-17359769,17359842-17360215
          Length = 524

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 428 KAWGANEEDTWRHEWYFR-PVVHDSQILFYIY 520
           K+ G++ ED   H  Y+R P  HD+++ ++ +
Sbjct: 100 KSGGSSAEDLGHHAGYYRLPNTHDARLFYFFF 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,511,418
Number of Sequences: 37544
Number of extensions: 292796
Number of successful extensions: 766
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)