Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G07
         (580 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04700.1 68417.m00690 calcium-dependent protein kinase, putat...    29   3.0  
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a...    28   3.9  
At5g17290.1 68418.m02025 autophagy protein Apg5 family contains ...    27   9.0  
At2g40910.2 68415.m05048 F-box protein-related similar to  F-box...    27   9.0  
At2g40910.1 68415.m05049 F-box protein-related similar to  F-box...    27   9.0  
At1g15520.1 68414.m01867 ABC transporter family protein similar ...    27   9.0  

>At4g04700.1 68417.m00690 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Nicotiana tabacum] gi|3283996|gb|AAC25423;
           contains protein kinase domain, Pfam:PF00069
          Length = 485

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 2   KAAVKTTFQLEKECRSDVISSVVNKLLLEGQPNVVEYAYSLWYRSGEDIVKVY 160
           K  +KT  + ++EC  DV   +     L G+PN+VE+  +   +    IV  Y
Sbjct: 57  KTILKTKLK-DEECEEDVKREIRIMKQLSGEPNIVEFKNAYEDKDSVHIVMEY 108


>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
           almost identical to Lon protease homolog 2
           mitochondrial precursor SP:P93655, GI:1848290 from
           [Arabidopsis thaliana]
          Length = 940

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 187 KQQSKLYRKVNFDYVLTGSVPETVSVFDD 101
           KQ  K+YRK+    V  G+VPE  +V  D
Sbjct: 655 KQIEKIYRKIALKLVREGAVPEEPAVASD 683


>At5g17290.1 68418.m02025 autophagy protein Apg5 family contains
           Pfam profile: PF04106 autophagy protein Apg5
          Length = 337

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 562 DGSSEL*RLLVMSVVNVEQYLTIMYDWTEIPLMSPSVF 449
           DGS E+  + ++ +  +E  L I + W    LM+P  +
Sbjct: 288 DGSREMGEIKLVRIQGIEMKLEIPFSWVVNNLMNPEFY 325


>At2g40910.2 68415.m05048 F-box protein-related similar to  F-box
           protein family, AtFBX9 (GI:20197985) [Arabidopsis
           thaliana]; similar to F-box protein family, AtFBX8
           (GI:20197464) [Arabidopsis thaliana]
          Length = 442

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 238 LESKFITFIGN*HWIFVKQQSKLYRKVNFDYVLTGSVPETVSVF 107
           + S F T + + HW+FV +    +RKV          P TV  F
Sbjct: 222 ISSAFFTNLKSEHWVFVLEAGGSWRKVRTLESYHPHAPSTVGQF 265


>At2g40910.1 68415.m05049 F-box protein-related similar to  F-box
           protein family, AtFBX9 (GI:20197985) [Arabidopsis
           thaliana]; similar to F-box protein family, AtFBX8
           (GI:20197464) [Arabidopsis thaliana]
          Length = 449

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 238 LESKFITFIGN*HWIFVKQQSKLYRKVNFDYVLTGSVPETVSVF 107
           + S F T + + HW+FV +    +RKV          P TV  F
Sbjct: 229 ISSAFFTNLKSEHWVFVLEAGGSWRKVRTLESYHPHAPSTVGQF 272


>At1g15520.1 68414.m01867 ABC transporter family protein similar to
           ABC1 protein GI:14331118 from [Nicotiana
           plumbaginifolia]
          Length = 1423

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 127 PETVSVFDDVWLSFEE*FIYDGADD 53
           PET ++FDD+ L  E   IY+G  D
Sbjct: 388 PETFNLFDDIILIAEGEIIYEGPRD 412


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,848,180
Number of Sequences: 28952
Number of extensions: 246024
Number of successful extensions: 675
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)