Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G06
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    97   1e-21
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    28   0.54 
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    26   2.2  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    26   2.2  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    25   6.7  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    25   6.7  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    24   8.8  
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces...    24   8.8  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 96.7 bits (230), Expect = 1e-21
 Identities = 47/80 (58%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
 Frame = +1

Query: 103 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADSSK-MYVVCGAI 279
           M+N+AG+ VDLY PRKCSA+NR+I AKDHASVQ+ +  VD A GR     K  Y + G +
Sbjct: 1   MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISGFV 59

Query: 280 RRMGESDDCIVRLTKKDGIL 339
           R  GESDDCI RLT +DG+L
Sbjct: 60  RSKGESDDCINRLTTQDGLL 79


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 28.3 bits (60), Expect = 0.54
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 333 PVFLSEPDYAVVGLSHPANGSTDHVHLGGVSSTSGCR 223
           P+++S+P    VG++HP N ++D    GG      CR
Sbjct: 397 PMYVSQPSNNAVGVNHP-NDNSDSEAKGGFFDMICCR 432


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 152 HFLGQYKSTNSPASFCILCICNIDNCVISR*NNY 51
           H +   +S+ SP+S  +L +  ID+  + R NNY
Sbjct: 215 HTINNMQSSPSPSSSFLLPLTQIDSQNVKRSNNY 248


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 217 RPLSRAAPMRGPSHGSDDYSPSISLGS 137
           +P  R+     PS+  +D+ PS SLGS
Sbjct: 407 QPQGRSPNEHSPSNHPEDFPPSFSLGS 433


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 88  LQIHKMQNDAGEFVD 132
           +Q+ K QND GEF+D
Sbjct: 269 IQLAKTQNDLGEFLD 283


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 35  IIKCFSSYFIVKLHNCQYYRYTKCRTTLVNSLTCTAQGNARRVI 166
           + KCFS  FI  LH     RY    + L N L   A+ NA R++
Sbjct: 134 LAKCFSRLFINDLHGTTVKRYPYI-SYLPNWL--LAKNNAERLV 174


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -1

Query: 233 PVAGSTSAITSCTDAWSFAWIRRLLAEHFLGQYKSTNSPASFCILCICNIDNCVIS 66
           P+ G  +   + + +WS A +    A H+   Y++      FC L + N  N V S
Sbjct: 122 PMEGHQNEFQAVSSSWSDAELIASAASHYTQIYQAELFQKLFCRLAV-NAMNLVTS 176


>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 276

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 213 RYHELHRCVVLRMDQTITRRAFPWAVQVNEFTSVVLHFV 97
           ++HEL+RC+V  +D        P      E  S VL ++
Sbjct: 211 KFHELNRCIVQLIDDFNMVNFLPLESGNEESVSRVLSYI 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,892,331
Number of Sequences: 5004
Number of extensions: 36479
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)