Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_G06
(434 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191 73 1e-13
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095... 71 3e-13
11_01_0223 + 1746203-1746228,1746344-1746463,1746942-1747062,174... 29 1.2
02_04_0221 - 21021886-21022144,21022227-21022345,21022681-210229... 29 2.2
01_06_1035 + 33964570-33964758,33965664-33965759,33965855-339659... 28 2.9
05_07_0144 - 28007477-28008412 28 3.8
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541... 27 5.0
10_01_0236 + 2486371-2486952 27 6.6
08_02_0386 - 16575636-16575698,16575799-16575858,16575947-165762... 27 6.6
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 27 6.6
07_03_1698 + 28803971-28804534,28804614-28804696,28804780-288049... 27 8.7
03_06_0680 - 35497868-35497884,35498058-35501961 27 8.7
03_02_0909 - 12310460-12310759,12310882-12310989,12311099-123112... 27 8.7
01_06_1554 + 38217297-38217539,38217783-38218352,38218439-38219008 27 8.7
01_06_0608 + 30575897-30576142,30576252-30576755 27 8.7
>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
Length = 82
Score = 72.9 bits (171), Expect = 1e-13
Identities = 37/75 (49%), Positives = 48/75 (64%)
Frame = +1
Query: 103 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADSSKMYVVCGAIR 282
MQN+ G+ VDLY PRKCSA+NR+I AKDHASVQ+ I VD G + + G IR
Sbjct: 1 MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59
Query: 283 RMGESDDCIVRLTKK 327
G++D + RL +K
Sbjct: 60 AQGDADSALDRLWQK 74
>03_05_0610 -
26108546-26108671,26108739-26108789,26109410-26109542,
26109633-26109682
Length = 119
Score = 71.3 bits (167), Expect = 3e-13
Identities = 36/75 (48%), Positives = 47/75 (62%)
Frame = +1
Query: 103 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADSSKMYVVCGAIR 282
MQN+ G+ VDLY PRKCS +NR+I AKDHASVQ+ I VD G + + G IR
Sbjct: 1 MQNEEGQMVDLYVPRKCSTTNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59
Query: 283 RMGESDDCIVRLTKK 327
G++D + RL +K
Sbjct: 60 AQGDADSALDRLWQK 74
>11_01_0223 +
1746203-1746228,1746344-1746463,1746942-1747062,
1747441-1747572,1748266-1748375,1748465-1748648,
1749153-1749305,1749672-1749818
Length = 330
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 193 MRGPSHGSDDYSPSISLGSTSQRIHQRRSAFCV 95
MR P+ G D P + LG HQ+ SA C+
Sbjct: 262 MREPAGGDDVSRPMLFLGEVMSHEHQKGSASCI 294
>02_04_0221 -
21021886-21022144,21022227-21022345,21022681-21022920,
21023064-21023171,21023272-21023331,21023991-21024066,
21024155-21024360,21024722-21024784,21024925-21025012,
21025515-21026015,21027206-21027603
Length = 705
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 265 PRTSWRSQQHVRLQGPRPLSRAAPMRGPSHGSDDYSPS 152
PR QH L PRP+S++APM S + SPS
Sbjct: 69 PRCPGPQDQHHGLPLPRPVSKSAPMPLASPAAAPPSPS 106
>01_06_1035 +
33964570-33964758,33965664-33965759,33965855-33965923,
33966644-33966748,33966852-33966908,33967065-33967265,
33967915-33968007,33968070-33968169,33968322-33968421,
33968869-33968954,33969294-33969403
Length = 401
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 238 HVRLQGPRPLSRAAPMRGPSHGSDDYSPSISLGSTSQR 125
H+ Q PL+RA P H SPS+ LGS + R
Sbjct: 6 HLLSQSLYPLNRANPAAARGHLRFQASPSVRLGSGTSR 43
>05_07_0144 - 28007477-28008412
Length = 311
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 332 PSFL-VSLTMQSSDSPILRMAPQTTYILEESAARPVAGSTSA 210
P FL +S + S ++APQTT I ++A V STSA
Sbjct: 35 PGFLSLSPSSVSPGDAAAQLAPQTTTITTSNSAAAVGNSTSA 76
>08_01_0619 +
5412058-5413224,5413357-5413476,5413755-5413831,
5414201-5414321
Length = 494
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 292 LPSCEWLHRPRTSWRSQQHVRLQGPRPLSRAAPMRGP 182
L + E L++ SW Q+ RL+ P PL+ P + P
Sbjct: 228 LATFEGLYKEALSWFEQECQRLEPPMPLALPPPPQPP 264
>10_01_0236 + 2486371-2486952
Length = 193
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -2
Query: 274 LHRPRTSWRSQQHVRL-QGPRPLSRAAPMRGP---SHGSDDYSPSISLGSTSQRIH 119
+ +PRT + R Q RPL RAAP+ P + DD ++ G +H
Sbjct: 108 IKKPRTPRSGEGQARAPQRRRPLERAAPLPPPAAVAEALDDLEREVTRGFVEDLLH 163
>08_02_0386 -
16575636-16575698,16575799-16575858,16575947-16576239,
16576361-16576517,16576601-16576948,16577047-16577177,
16577417-16577882,16578425-16579132
Length = 741
Score = 27.1 bits (57), Expect = 6.6
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = -3
Query: 252 GGVSSTSGCRVHVRYH-ELHRCVVLRMDQTIT---RRAFPWAVQVNEFTSVVL 106
GG SS+S V +H +H R ++ RRA PWA +E T VVL
Sbjct: 103 GGSSSSSTATARVPFHLPIHPPPPEREEEEEKKGIRRAVPWAAARDEETKVVL 155
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 269 QTTYILEESAARPVAGSTSAIT 204
Q T ILEE+ +P+ STSAIT
Sbjct: 510 QITNILEENVVQPLLVSTSAIT 531
>07_03_1698 +
28803971-28804534,28804614-28804696,28804780-28804900,
28804982-28805155,28805245-28805349,28805439-28805765
Length = 457
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 277 IRRMGESDDCIVRLTKKDGILAKNY*SAQSHKKLITV*VKHP 402
+R+ G S+ +++ +KD IL KN+ ++ I V HP
Sbjct: 137 VRKKGTSEIYAMKVMRKDKILEKNHAEYMKAERDILTKVDHP 178
>03_06_0680 - 35497868-35497884,35498058-35501961
Length = 1306
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 306 HSQAH*ERRDTG*ELLKCAVT*EAYYCISKTPTQNLNS 419
H+QA+ + ELL C + E YCIS NL++
Sbjct: 1084 HTQAYEQSTPVRSELLPCLESLEISYCISFVEMPNLSA 1121
>03_02_0909 -
12310460-12310759,12310882-12310989,12311099-12311272,
12311370-12311490,12311569-12311651,12311754-12312420,
12314073-12314440
Length = 606
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 277 IRRMGESDDCIVRLTKKDGILAKNY*SAQSHKKLITV*VKHP 402
+R+ G S+ +++ +KD IL KN+ ++ I V HP
Sbjct: 294 VRKKGTSEIYAMKVMRKDKILEKNHAEYMKAERDILTKVDHP 335
>01_06_1554 + 38217297-38217539,38217783-38218352,38218439-38219008
Length = 460
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/60 (25%), Positives = 24/60 (40%)
Frame = -2
Query: 289 PSCEWLHRPRTSWRSQQHVRLQGPRPLSRAAPMRGPSHGSDDYSPSISLGSTSQRIHQRR 110
P E H P+T WR H + G +S + PS S ++ + + +RR
Sbjct: 62 PKMETSHEPQTPWRLAVHPAVVGTVRVSGCGAVVAPSRRQCRVSAAVLTAAETATATRRR 121
>01_06_0608 + 30575897-30576142,30576252-30576755
Length = 249
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +3
Query: 123 IR*LVLPKEML---GE*SSDPCEGPRIGAARDSGRG 221
+R ++ KE L G SDPC+ RIGA D+GRG
Sbjct: 186 LRAMLAKKEELAAAGNNGSDPCKRRRIGA--DTGRG 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,463,246
Number of Sequences: 37544
Number of extensions: 254935
Number of successful extensions: 903
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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