Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G06
         (434 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal prot...   112   9e-26
U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical p...    30   0.63 
U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z78059-2|CAH04726.2|  538|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z81109-2|CAB03244.1|  408|Caenorhabditis elegans Hypothetical pr...    27   5.9  
U53154-5|AAC25853.1|  347|Caenorhabditis elegans Hypothetical pr...    27   5.9  
AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily a...    27   5.9  

>U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 21 protein.
          Length = 88

 Score =  112 bits (270), Expect = 9e-26
 Identities = 52/83 (62%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
 Frame = +1

Query: 103 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADSSKMYVVCGAI 279
           MQNDAG+ V+LY PRKCS+SNR+I  KDHASVQ+   DVDP TGR     S  Y +CGAI
Sbjct: 1   MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAI 60

Query: 280 RRMGESDDCIVRLTKKDGILAKN 348
           RRMGESDD I+RL +KDG++ ++
Sbjct: 61  RRMGESDDAILRLAQKDGLVPRD 83


>U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical
           protein F26A1.12 protein.
          Length = 231

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -2

Query: 259 TSWRSQQHVRLQGPRPLSRAAPMRGPSHGSDDYSPSISLGSTSQRIHQRRSAFCVSV 89
           +S   + H    GPRP     P R P       +P+ S       IH+RR  +C+ V
Sbjct: 35  SSGEGRGHHHKHGPRPPRPNRPPRPPPATPPPTTPAPSCPGGWSLIHRRRGPWCIQV 91


>U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical
           protein C33G8.8 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 11  RLVYCK*VIIKCFSSYFIVKLHNCQYYRYTKCRTTLVNSLTCTAQGNARR 160
           R V+ + ++I+C   + +   H C++ R  KC  T      C  QGN  +
Sbjct: 29  RYVHSQKLVIECTCLHRLPSSHPCRHCRMEKCIAT--GMTMCKVQGNREK 76


>Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical
           protein T25E12.4b protein.
          Length = 220

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 217 VDPATGRAADSSKMYVVCGAIRRMGESDDCIVRLTKKDG 333
           V  + G  + SS   +   A R +G + DC+V +TK++G
Sbjct: 123 VADSEGAGSYSSFSSIASTASRMLGRAADCLVLMTKRNG 161


>Z78059-2|CAH04726.2|  538|Caenorhabditis elegans Hypothetical
           protein C34B4.4 protein.
          Length = 538

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -1

Query: 176 WIRRLLAEHFL-GQYKSTNSPASFCILCICNIDNC 75
           W  ++L   F  G Y +T SP  + + C C   NC
Sbjct: 341 WPEKMLRNFFSKGCYNTTMSPEHYYVYCRCEEANC 375


>Z81109-2|CAB03244.1|  408|Caenorhabditis elegans Hypothetical
           protein R10D12.2 protein.
          Length = 408

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 176 WIRRLLAEHFLGQYKSTNSPASFCILC 96
           WI  +L    L  Y  TN  A  C++C
Sbjct: 30  WINLILVSFTLNNYDQTNEVARTCLVC 56


>U53154-5|AAC25853.1|  347|Caenorhabditis elegans Hypothetical
           protein C33G8.10 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 11  RLVYCK*VIIKCFSSYFIVKLHNCQYYRYTKCRTTLVNSLTCTAQGNARR 160
           R V+ + + I C   + +   H C++ R  KC  T    + C  QG+  +
Sbjct: 29  RYVHSRKLDISCTCKHRLATSHPCRHCRMLKCMAT--GMVKCKVQGSREK 76


>AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 123 protein.
          Length = 655

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = -1

Query: 284 LRMAPQTTYILEESAARPVAGSTS-AITSCTDAWSFAWIRRLLAEHFLGQYKSTNSPASF 108
           +R +P     L+E   R V  +   A  S  D      ++R +  ++   +   N P +F
Sbjct: 90  IRPSPYKVAFLQEEKCRLVCDTKKYARGSADDLAKLRLLQRAMTLNYQHHWIVDNMPVTF 149

Query: 107 CILCICNIDNC 75
           C   + N+D C
Sbjct: 150 CFKNLQNMDVC 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,607,923
Number of Sequences: 27780
Number of extensions: 214426
Number of successful extensions: 720
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)