Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G06
         (434 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B) ribo...    79   2e-15
At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C) ribo...    77   5e-15
At2g12505.1 68415.m01352 hypothetical protein                          31   0.25 
At5g14350.1 68418.m01677 plastocyanin-like domain-containing pro...    30   0.59 
At5g24740.1 68418.m02920 expressed protein                             29   1.4  
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P...    29   1.4  
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi...    29   1.8  
At3g04890.1 68416.m00531 expressed protein                             28   3.1  
At1g68020.2 68414.m07771 glycosyl transferase family 20 protein ...    27   4.1  
At1g68020.1 68414.m07770 glycosyl transferase family 20 protein ...    27   4.1  
At3g63180.1 68416.m07097 expressed protein                             27   7.2  
At2g35110.1 68415.m04307 HEM protein-related weak similarity to ...    27   7.2  
At2g35960.1 68415.m04414 harpin-induced family protein / HIN1 fa...    26   9.5  

>At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B)
           ribosomal protein S21, cytosolic - Oryza sativa,
           PIR:S38357
          Length = 82

 Score = 78.6 bits (185), Expect = 2e-15
 Identities = 38/81 (46%), Positives = 53/81 (65%)
 Frame = +1

Query: 103 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADSSKMYVVCGAIR 282
           M+NDAG+  +LY PRKCSA+NR+I +KDHASVQL I  +D A G        + +CG +R
Sbjct: 1   MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLD-ANGLYTGQFTTFALCGFVR 59

Query: 283 RMGESDDCIVRLTKKDGILAK 345
             G++D  + RL +K  + AK
Sbjct: 60  AQGDADSGVDRLWQKKKVEAK 80


>At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C)
           ribosomal protein S21, Zea mays, PIR:T03945
          Length = 85

 Score = 77.0 bits (181), Expect = 5e-15
 Identities = 38/81 (46%), Positives = 52/81 (64%)
 Frame = +1

Query: 103 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADSSKMYVVCGAIR 282
           MQN+ G+  +LY PRKCSA+NRLI +KDHASVQL I  +D A G        + +CG +R
Sbjct: 1   MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLD-ANGLYTGQFTTFALCGFVR 59

Query: 283 RMGESDDCIVRLTKKDGILAK 345
             G++D  + RL +K  + AK
Sbjct: 60  AQGDADSGVDRLWQKKKVEAK 80


>At2g12505.1 68415.m01352 hypothetical protein
          Length = 344

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -3

Query: 357 TSVVLSQYPVFLSEPDYAVVGLSHPAN---GSTDHVHL 253
           T + LS   + LS+P Y  +GLSHP     G +D +HL
Sbjct: 143 TFLDLSHPTIVLSDPFYQTIGLSHPTRPTIGLSDPIHL 180


>At5g14350.1 68418.m01677 plastocyanin-like domain-containing
           protein similar to NtEPc [Nicotiana tabacum] GI:4514716;
           contains Pfam profile PF02298: Plastocyanin-like domain
          Length = 490

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -3

Query: 330 VFLSEPDYAVVGLSHPANGSTDHVHLG-GVSSTSGCRVHVRYHELH 196
           +FL EP+ +++G S     +T+H+ LG  VS+     V V ++E H
Sbjct: 24  LFLCEPNRSLLGSSVGVGWNTEHLELGKEVSTEDSSSVSVDHYESH 69


>At5g24740.1 68418.m02920 expressed protein
          Length = 3306

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -2

Query: 250  RSQQHVRLQGPRPLSRAAPMR 188
            RSQ+H RL+ PRPLSR  P+R
Sbjct: 3114 RSQRH-RLRLPRPLSREQPLR 3133


>At3g18190.1 68416.m02314 chaperonin, putative similar to
           SWISS-PROT:P50991- T-complex protein 1, delta subunit
           (TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 536

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -1

Query: 269 QTTYILEESAARPVAGSTSAITSCTD 192
           Q T ILEE+  +P+  STSAIT  T+
Sbjct: 496 QITNILEENVVQPLLVSTSAITLATE 521


>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 682

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +1

Query: 205 VIADVDPATGRAADSSKMYVVCGA-----IRRMGESDDCIVRLTKKD 330
           VI+++D A    ADSS   V C A     + ++ +SD CI  + + D
Sbjct: 339 VISEIDAAIANGADSSPQLVACKAEAFLRLHQIKDSDLCISSIPRLD 385


>At3g04890.1 68416.m00531 expressed protein
          Length = 216

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 157 ASNRLIHAKDHASVQLVIADVDPATG-RAADSSKMYVVCGAIRRMGESDDCI 309
           +S  +   KD +  ++   DVD   G   +D    Y V G +     SDDCI
Sbjct: 57  SSTSIATNKDRSKNEVTAGDVDDVMGILRSDYRNFYFVTGVLTSAIYSDDCI 108


>At1g68020.2 68414.m07771 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] 56 kDa subunit (EC 2.4.1.15)
           (Trehalose-6-phosphate synthase) {Saccharomyces
           cerevisiae}; contains Pfam profile: PF02358
           trehalose-phosphatase
          Length = 860

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 227 AGSTSAITSCTDAWSFAW 174
           +GS+S+ T C+  W+F+W
Sbjct: 75  SGSSSSSTCCSKGWNFSW 92


>At1g68020.1 68414.m07770 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] 56 kDa subunit (EC 2.4.1.15)
           (Trehalose-6-phosphate synthase) {Saccharomyces
           cerevisiae}; contains Pfam profile: PF02358
           trehalose-phosphatase
          Length = 700

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 227 AGSTSAITSCTDAWSFAW 174
           +GS+S+ T C+  W+F+W
Sbjct: 75  SGSSSSSTCCSKGWNFSW 92


>At3g63180.1 68416.m07097 expressed protein
          Length = 978

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -2

Query: 295  TLPSCEWLHRPRTSWRSQQHVRLQGPRPLSRAAPMR-GPSHGSDDYSPSISLGSTSQRIH 119
            +L SC  L+  +  ++SQQ +R  G   +S AAP    PS G    S   S   T    H
Sbjct: 860  SLTSCTSLNLKQ--FQSQQQIRTHGQTQISFAAPTNPQPSQGKQGRSGGSSPSVTGSASH 917


>At2g35110.1 68415.m04307 HEM protein-related weak similarity to
            Membrane-associated protein Hem (Dhem-2)
            (Swiss-Prot:P55162) [Drosophila melanogaster]; weak
            similarity to Nck-associated protein 1 (NAP 1) (p125Nap1)
            (Membrane-associated protein HEM-2) (Swiss-Prot:P55161)
            [Rattus norvegicus]
          Length = 1339

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -2

Query: 271  HRPRTSWRS--QQHVRLQGPRPLSRAAPMRGPSHGSDDYSPSISLGSTSQR 125
            H P T  RS   Q+       PLS A+P   PS      SPS+   +T QR
Sbjct: 1193 HVPYTILRSIYTQYYSNTPSTPLSTASPYHSPSVSLIHASPSMKNSTTPQR 1243


>At2g35960.1 68415.m04414 harpin-induced family protein / HIN1
           family protein / harpin-responsive family protein
           similar to harpin-induced protein hin1 ( GI:1619321)
           [Nicotiana tabacum]
          Length = 210

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 20/67 (29%), Positives = 27/67 (40%)
 Frame = -3

Query: 294 LSHPANGSTDHVHLGGVSSTSGCRVHVRYHELHRCVVLRMDQTITRRAFPWAVQVNEFTS 115
           LS P N  T +  +   S     R+ + Y  LH     R  Q   R A P   Q ++  +
Sbjct: 62  LSQP-NLLTSNFQITIASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDN 120

Query: 114 VVLHFVY 94
           V   FVY
Sbjct: 121 VWSPFVY 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,900,417
Number of Sequences: 28952
Number of extensions: 195809
Number of successful extensions: 616
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)