Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_G05
(498 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16801| Best HMM Match : MSSP (HMM E-Value=0.31) 29 2.1
SB_6077| Best HMM Match : EGF (HMM E-Value=0) 29 2.1
SB_31961| Best HMM Match : EGF (HMM E-Value=0) 29 2.8
SB_13908| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_49338| Best HMM Match : Antimicrobial18 (HMM E-Value=5.8) 24 4.7
SB_3199| Best HMM Match : 7tm_1 (HMM E-Value=0) 27 6.5
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.5
SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9) 27 8.6
SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07) 27 8.6
>SB_16801| Best HMM Match : MSSP (HMM E-Value=0.31)
Length = 571
Score = 29.1 bits (62), Expect = 2.1
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = -3
Query: 322 KLVAFVNLLCARSCHANVVSQ*LITSHVAILSRSGPGAAPVFVIDLEEAVV-SRSVLIHF 146
KL F N L SC N+ S + T+H I S + FVID + V+ S +I
Sbjct: 170 KLYPFCNKL--DSCCNNLASFVINTTHFVINSNQFVIDSTQFVIDSTQFVIDSTQFVIDS 227
Query: 145 TNFVGKPSAFVLDKADPVTHQT 80
T FV + FV++ V + T
Sbjct: 228 TRFVINSTRFVINSTRFVINLT 249
>SB_6077| Best HMM Match : EGF (HMM E-Value=0)
Length = 1165
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +2
Query: 188 IND-KYWCSTGSTPGKDCHVTCNQLLTDDISVAATCAKKI--YKRHKFDAWYGWKNHCQH 358
+ND K C G T GKDCH+ N+ ++ TC + Y D + G +C+
Sbjct: 424 VNDYKCSCLQGYT-GKDCHIDINECSSNPCQYGGTCLNLLNGYACLCIDGYTGL--NCE- 479
Query: 359 GLPDISDC 382
DI DC
Sbjct: 480 --KDIDDC 485
>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
Length = 2813
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 197 KYWCSTGSTPGKDCHVTCNQLLTDDISVAATCAKKI 304
K CSTG T GK+C V ++ T ATC +I
Sbjct: 1539 KCQCSTGYT-GKNCEVNIDECATKPCLNGATCVDQI 1573
>SB_13908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 629
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +2
Query: 62 RQGFDESLMSNWVCLVENESGRFTDKIGKVNKNGSRDYGLFQINDKYWCSTGSTPGK 232
R GF L W + E E R D+ + ++ + GLF I+ KY+ GS K
Sbjct: 285 RGGFTWDLFFTWKAIPEAEKKRRKDETDYI-RSPTMAGGLFAIHKKYFYDLGSYDSK 340
>SB_49338| Best HMM Match : Antimicrobial18 (HMM E-Value=5.8)
Length = 265
Score = 24.2 bits (50), Expect(2) = 4.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 230 KDCHVTCNQLLTDDISVAATCAKKIYKRHKFD 325
K C V N LL+ + V+ T ++KR+ F+
Sbjct: 231 KRCSVPENTLLSKQVDVSTTWKVLLHKRNLFE 262
Score = 22.2 bits (45), Expect(2) = 4.7
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 146 KVNKNGSRDYGLFQINDKYWCSTGSTPGKDCHV 244
+V KN + D I + + G+ P KDC +
Sbjct: 188 EVEKNSASDSNKASIPRQKQITFGAKPAKDCQL 220
>SB_3199| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 399
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 208 APVFVIDLEEAVVSRSVLIHFTNFVGKPSAFVLDKADPVTHQTFIE 71
A +F+ + +V+ + F NF AF++ K +PV H T +E
Sbjct: 77 ADLFITCVSMPIVTMVNIQGFQNFTSFTLAFIVCKLNPVIHGTSME 122
>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2317
Score = 24.6 bits (51), Expect(2) = 6.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 332 YGWKNHCQHGLPDIS 376
YGW N C HG +S
Sbjct: 2165 YGWNNCCTHGATPMS 2179
Score = 21.0 bits (42), Expect(2) = 6.5
Identities = 9/36 (25%), Positives = 13/36 (36%)
Frame = +2
Query: 251 NQLLTDDISVAATCAKKIYKRHKFDAWYGWKNHCQH 358
N T + C K + + + GW N C H
Sbjct: 2118 NNCCTHEYGWNNCCNNKYRWNNCYTHYNGWSNCCSH 2153
>SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9)
Length = 870
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/38 (26%), Positives = 16/38 (42%)
Frame = +2
Query: 245 TCNQLLTDDISVAATCAKKIYKRHKFDAWYGWKNHCQH 358
TC+ L +S + C+ + + W WKN H
Sbjct: 351 TCDSLAVRKLSDSKACSSAVNSLRIVNDWKAWKNRDDH 388
>SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07)
Length = 546
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +2
Query: 233 DCHVTCNQLLTDDISVAATCAKKIYKRHKF 322
D +V+ N+ TD++++A+TCA+ + KF
Sbjct: 108 DENVSNNEPHTDNVNIASTCAEPLADASKF 137
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,656,713
Number of Sequences: 59808
Number of extensions: 289355
Number of successful extensions: 713
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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