Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_G05
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical pr...    31   0.61 
AF067611-3|AAC19179.1|  139|Caenorhabditis elegans Hypothetical ...    31   0.61 
AF067611-4|AAC19181.1|  139|Caenorhabditis elegans Hypothetical ...    29   1.4  
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AL117204-42|CAB55146.2|  714|Caenorhabditis elegans Hypothetical...    27   10.0 

>U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical
           protein F22A3.6a protein.
          Length = 139

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
 Frame = +2

Query: 101 CLVENESGRFTDKIGKVNKNGSRDYGLFQINDKYWCSTGSTPGKDCHVT--CNQLLTDDI 274
           C+   ESG     IG     GS   G +QI   Y+   G    K    T    +   DD+
Sbjct: 23  CICMRESG--CKPIGCHMDVGSLSCGYYQIKIGYYEDCGQPTKKAGETTEAAWKRCADDL 80

Query: 275 SVAATCAKKIYKRHK 319
           + A TC +  Y R+K
Sbjct: 81  NCATTCVENYYNRYK 95


>AF067611-3|AAC19179.1|  139|Caenorhabditis elegans Hypothetical
           protein C45G7.3 protein.
          Length = 139

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
 Frame = +2

Query: 101 CLVENESGRFTDKIGKVNKNGSRDYGLFQINDKYWCSTGSTPGKDCHVT--CNQLLTDDI 274
           C+   ESG     IG     GS   G +QI   Y+   G    K    T    +   +D+
Sbjct: 23  CICMRESG--CKPIGCNMDVGSLSCGYYQIKLPYYEDCGQPTKKSGETTEAAWKRCANDL 80

Query: 275 SVAATCAKKIYKRHK 319
           S A TC +  Y R+K
Sbjct: 81  SCATTCVENYYNRYK 95


>AF067611-4|AAC19181.1|  139|Caenorhabditis elegans Hypothetical
           protein C45G7.2 protein.
          Length = 139

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
 Frame = +2

Query: 101 CLVENESGRFTDKIGKVNKNGSRDYGLFQINDKYWCSTGSTPGKDCHVTCNQLL----TD 268
           C+   ESG     IG     GS   G +QI   Y+   G  PGK  H    ++      D
Sbjct: 23  CICMRESG--CKPIGCHMDVGSLSCGYYQIKIPYYEDCGQ-PGKK-HGESTEVAWKRCAD 78

Query: 269 DISVAATCAKKIYKRHKFD 325
           D+  A  C +  Y R+K +
Sbjct: 79  DLKCATNCVENYYNRYKHE 97


>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical protein
            W02C12.1 protein.
          Length = 1372

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 146  KVNKNGSRDYGLFQINDKYWCSTGSTPGKDCHVTC 250
            KV  NG  D G  +I ++Y C  G    +D  V C
Sbjct: 902  KVLPNGRPDVGSLKIKEEYLCQAGQVVVRDLCVPC 936


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical
           protein B0024.8 protein.
          Length = 1185

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 44  LVQELRRQGFDESLMSNWVCLVEN 115
           L+ EL      E + SNW CLVEN
Sbjct: 159 LITELHHILIPELVKSNWTCLVEN 182


>AL117204-42|CAB55146.2|  714|Caenorhabditis elegans Hypothetical
           protein Y116A8C.4 protein.
          Length = 714

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 113 NESG-RFTDKIGKVNKNGSRDYGLFQINDKY 202
           NES     + +  + K G R++GLFQI+ KY
Sbjct: 194 NESDFNLNEMLNNLVKLGQRNFGLFQISFKY 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,728,055
Number of Sequences: 27780
Number of extensions: 215392
Number of successful extensions: 550
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)